wright-fisher-model

There are 0 repository under wright-fisher-model topic.

• zhangyi-he / WFM-1L-DiffusApprox-MLE

  Estimation of natural selection and allele age from time series allele frequency data using a novel likelihood-based approach

  natural-selectionpopulation-geneticsallele-agehmmdiffusion-approximationwright-fisher-modelmleadnatime-series-data
  Language:R 3

• TomMakesThings / Wright-Fisher-Simulator

  Simulator for the Wright-Fisher model of genetic drift for haploid and diploid populations

  allele-frequenciesdiploidhaploidlinkage-disequilibriumpopulation-geneticssimulationwright-fisher-modelbioinformatics
  Language:Jupyter Notebook 1

• VeaLi / Stats

  Poker test for independence, Inversion method, Method of approximations, Rejection method, Quadratic congruent random number generator, Freedman–Diaconis rule, Fixation Index, Extended Haplotype Homozygosity, Wright-Fisher model

  inversion-methodpoker-testrandom-number-generatormethod-of-approximationsrejection-samplingfixation-indexwright-fisher-modelextended-haplotype-homozygosity
  Language:Python 1

• zhangyi-he / WFM-1L-DiffusApprox-PMMH

  Estimating temporally variable selection intensity from ancient DNA data

  population-geneticsgenotype-likelihoodsnatural-selectionhmmdiffusion-approximationpmmhwright-fisher-modeladnatime-series-data
  Language:R 1

• zhangyi-he / WFM-1L-DiffusApprox-PMMHwGibbs

  Estimating temporally variable selection intensity from ancient DNA data with a combination of forward- and backward-in-time simulations

  population-geneticsgenotype-likelihoodsnatural-selectionhmmadnadiffusion-approximationwright-fisher-modelpmmhtime-series-data
  Language:R 1

• zhangyi-he / WFM-1L-DiffusApprox-BlockPMMH-Gallus

  Inferring the timing and strength of natural selection and gene migration in the evolution of chickens from ancient DNA data

  population-geneticsgene-migrationhmmnatural-selectiondiffusion-approximationwright-fisher-modeladnapmmhtime-series-data
  Language:R 0

• zhangyi-he / WFM-2L-Approx

  Approximations for the Wright-Fisher model of population dynamics under natural selection at two linked loci

  genetic-linkagenatural-selectionpopulation-geneticswright-fisher-modeldiffusion-approximationhierarchical-beta-approximationgaussian-approximation
  Language:R 0

• zhangyi-he / WFM-2L-DiffusApprox-AdaptPMMH

  Estimating temporally variable selection intensity from ancient DNA data with the flexibility of modelling linkage and epistasis

  genetic-linkagegenotype-likelihoodsnatural-selectionpopulation-geneticsepistatic-interactionhmmdiffusion-approximationwright-fisher-modeladnapmmhtime-series-data
  Language:R 0

• zhangyi-he / WFM-2L-DiffusApprox-PMMH

  Detecting and quantifying natural selection at two linked loci from time series data of allele frequencies with forward-in-time simulations

  adnanatural-selectionpopulation-geneticstime-series-datagenetic-linkagehmmdiffusion-approximationpmmhwright-fisher-model
  Language:R 0