Damianos P. Melidis's repositories
GenOtoScope
Automated ACMG/AMP classification for human variants associated with congenital hearing loss
temporalMNB
Method to improve MNB classifiers under feature drifts in textual streams
genotoscope_wiki
Wiki pages for GenOtoScope bioinformatics tool
HighDimensionalStatistics
Following code along reading of "High-Dimensional Statistics with a View Toward Applications in Biology", link: https://www.annualreviews.org/doi/full/10.1146/annurev-statistics-022513-115545.
BiomarkersDiscovery
Biomarkers discovery from bacterial abundance and gene expression data
damianosmel.github.io
Personal site
ExtractingEphemeralEntities
Code for extracting ephemeral entities from Twitter data set. This work is part of the publication "Enriching Lexicons with Ephemeral Words for Sentiment Analysis in Social Streams", D. P. Melidis et al., WIMS 2018 (to appear). This code is property of my colleague Msc. Alvaro Veizaga Campero.
flaskgenericapp
A template to make a flask app easy to configure and put to work
RidgeRegression
R code following the ridge regression lecture from https://arxiv.org/abs/1509.09169.
SeqPredExpAdvice
Sequential prediction by expert advice. Based on "Prediction, Learning and Games" by Cesa-Bianchi and Lugosi.
SMRT-Analysis
SMRT® Analysis is PacBio's bioinformatics software suite for analyzing single molecule, real-time DNA sequencing data
StemCells
Apply associations rules to find which mutations on iPSC single cells may turn them in cancer cells
tapes
TAPES : a Tool for Assessment and Prioritisation in Exome Studies
UniversityProgrammingProjects
Programming projects during my studies.
VirusGenoUtil
This is a project to contribute utilities for ViruSurf, a viral db centered in viral sequences.