Michael G. Campana's repositories
BaitsTools
Software for hybridization capture bait design
RatesTools
Pipeline to calculate de novo mutation rates from parent-offspring trios
ADMIXTURE-stats
CorrSieve helper scripts for ADMIXTURE data
amakihi_GO
Script to perform GO enrichment tests for avian malaria challenge experiments in 'amakihi
Avipoxvirus
Pipeline to identify avipoxivirus sequences
bait-development
Scripts and tools for bait set development
kinshipUtils
Kinship bootstrapping and triangular matrices
rCorrSieve
R implementation of CorrSieve
rubyCorrSieve
Ruby implementation of CorrSieve
FAECES
Scripts to analyze noninvasive DNA from Mojave canid scats
genome_coverage
Script to calculate genome coverage from a BEDGRAPH (bga)
genome_decontaminate
Script to remove NCBI-identified contaminant sequences from a genome
uce2speciestree
Pipeline script to generate input files for ASTRAL and SVDquartets from phyluce nexus alignments
ucealnstats
Calculate taxon-specific alignment statistics from a collection of UCE alignments