t-neumann

slamdunk

Streamlining SLAM-seq analysis with ultra-high sensitivity

nextflow-ngs

Generic Nextflow processes for next-generation sequencing data analysis

t-neumann.github.io

ksp-garage

VAB and SPH vessels for Kerbal Space Program

argon-dashboard

Argon - Dashboard for Bootstrap 5 by Creative Tim

Awesome-CV

:page_facing_up: Awesome CV is LaTeX template for your outstanding job application

awesome-nextflow

A curated list of nextflow based pipelines

BalancedBinarySquareNumberBruteForce

Brute force script for listing all permutations of a binary number with equal 1s and 0s of a given fixed length and finding square numbers in this set.

palantir

Palantir application for managing and browsing NGS analysis results

thesis

Doctoral thesis

bamgineer

Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets

bioconda-recipes

Conda recipes for the bioconda channel.

cryptocurrency-course-materials

Additional materials related to Bitcoin and Cryptocurrency Technologies course on Coursera, maintained by the mentors of that course.

GenomicOps-MCP

An MCP server for genomics, providing liftover and bedtools-like feature overlap queries via the UCSC REST API.

maxulysse.github.io

My own jekyll personnal website

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

ncov

Nextstrain build for novel coronavirus (nCoV)

nextflow

A DSL for data-driven computational pipelines

nf-co.re

Files for the main nf-core website >>>

palantir-importer

Data import into persisted objects for palantir application

palantir-processor

NGS data preparation and processing for palantir import

pindel

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

Porechop

adapter trimmer for Oxford Nanopore reads

rnafusion

RNA-seq analysis pipeline for detection gene-fusions

salmon-nf

Salmon Nextflow toy pipeline

samplot

Plot structural variant signals from many BAMs and CRAMs

slamseq

nf-core slamseq development repository

test-datasets

Test data to be used for automated testing with the nf-core pipelines

tools-iuc

Tool Shed repositories maintained by the Intergalactic Utilities Commission

website

UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)