BioTeam's repositories
covid-bioinformatics
Software tools to collect Coronavirus sequences and create protein and nucleotide HMMs
bioit-sharing-ml-notebooks
Sharing notebooks for Bio-IT World Demo
dictionary-visualizer
Stand-alone DD viewer for schema.json artifacts
ansible-playbook-perfsonar
A master playbook for deploying perfSONAR infrastructure
aws-genomics-workflows
Genomics Workflows on AWS
Bibliometrics
Scripts to generate bibliometrics data and perform analysis
bms-knowledge-repo
Git repository backend for BMS Knowledge Repo web app
cdis-manifest-bioteam
gen3.bioteam.net manifest.json
cloud-automation
Automation for standing up Gen3 commons on AWS, GCP, Azure, and on-prem
data-portal
Windmill: data portal for metadata submission and query
gen3-ui-component
Base UI component in gen3
gen3sdk-python
Gen3 SDK for Python
guppy
Server that support GraphQL queries on data from elasticsearch
hh-suite
Remote protein homology detection suite.
prql
PRQL is a modern language for transforming data — a simple, powerful, pipelined SQL replacement
quickstart-mongodb
AWS Quick Start Team
secrets-store-csi-driver
Secrets Store CSI driver for Kubernetes secrets - Integrates secrets stores with Kubernetes via a CSI volume.
service-workbench-on-aws
A platform that provides researchers with one-click access to collaborative workspace environments operating across teams, universities, and datasets while enabling university IT stakeholders to manage, monitor, and control spending, apply security best practices, and comply with corporate governance.
sphinx-documentation-demo
Attempting to demo the capabilities of Sphinx documentation
storybook-addon-jsdoc-to-mdx
Automatically generates MDX documentation from JSDoc comments for Storybook.
vqtomics
A Vue.js UI for querying variants from Omics.