DSLituiev

slideslicer

a toolbox for manipulation of digital pathology slides and annotations

mammoviews

scripts for automatic classification of mammography views

BestPracticesInProgramming

A summary of a course by Swiss Institute of Bioinformatics (SIB)

doccano

Open source text annotation tool for machine learning practitioner.

dslituiev.github.io

website/blog

kerastrainutils

bio-lm

We evaluate many models used for biomedical and clinical nlp tasks, and train new models that perform much better.

bioutils

provides common tools and lookup tables used primarily by the hgvs and uta packages

cardioloader

clinspacy

Clinical Natural Language Processing using spaCy, scispacy, and medspacy

contoso-chat

deep-learning-study-group

five-dollar-genome-analysis-pipeline

Workflows used for germline short variant discovery in WGS data

health-economics

lab-keras-r

learning-from-taxonomies

milr

multiple-instance logistic regression with lasso penalty.

MLeval

Machine learning model evaluation

ou_diffusion

pennysplitter

pROC

Display and analyze ROC curves in R and S+

pubmed-lookup

Lookup PubMed records and make Publication objects with info about a scientific publication

PyRuSH

init

python-novice-gapminder

Introduction to Python for non-programmers using gapminder data

QuickUMLS

System for Medical Concept Extraction and Linking

rle

scispacy

A full spaCy pipeline and models for scientific/biomedical documents.

shell-novice

Software Carpentry introduction to the shell for novices.

spaCy

💫 Industrial-strength Natural Language Processing (NLP) with Python and Cython

tensorflow-rstudio-docker