mahmoodlab

There are 0 repository under mahmoodlab topic.

CLAM
mahmoodlab / CLAM
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
bioimage-informatics camelyon16 camelyon17 clam computational-pathology data-efficient deep-learning digital-pathology histopathology mahmoodlab pathology quantitative-pathology tcga-data weakly-supervised-learning whole-slide-imaging
Language:Python 1064
mahmoodlab / UNI
Towards a general-purpose foundation model for computational pathology - Nature Medicine
foundation foundation-model histopathology mahmoodlab pathology uni pathology-foundation-model nature-medicine mass-100k pathology-dinov2 pathology-fm pathology-foundation pathology-self-supervised uni-foundation-model computational-pathology digital-pathology quantitative-pathology
Language:Jupyter Notebook 310
mahmoodlab / PathomicFusion
Fusing Histology and Genomics via Deep Learning - IEEE TMI
pathomic fusion multimodal pathology histopathology transcriptomics genomics multimodal-network computational-pathogenomics mahmoodlab
Language:Jupyter Notebook 273
mahmoodlab / CONCH
A vision-language foundation model for computational pathology - Nature Medicine
bioimage-analysis bioimage-informatics conch foundation-model health-informatics histopathology medical-imaging nlp-machine-learning pathology vision-language-pathology nature-medicine computational-pathology digital-pathology mahmoodlab quantitative-pathology
Language:Python 239
mahmoodlab / PORPOISE
Pan-Cancer Integrative Histology-Genomic Analysis via Multimodal Deep Learning - Cancer Cell
histology wsi-images pan-cancer-analysis genomics mahmoodlab
Language:Jupyter Notebook 183
mahmoodlab / TOAD
AI-based pathology predicts origins for cancers of unknown primary - Nature
histology pathology wsi-images histopathology cancer-imaging-research cancer-research cancer-detection mahmoodlab deep deep-learning bioimage-analysis bioimage-informatics toad unknown-primary cup
Language:Python 170
mahmoodlab / MCAT
Multimodal Co-Attention Transformer for Survival Prediction in Gigapixel Whole Slide Images - ICCV 2021
early-fusion genomics mahmoodlab mcat multimodal multimodal-deep-learning multimodal-fusion pathology
Language:Jupyter Notebook 156
mahmoodlab / Patch-GCN
Context-Aware Survival Prediction using Patch-based Graph Convolutional Networks - MICCAI 2021
wsi wsi-images gcn survival-prediction pathology histopathology mahmoodlab
Language:Python 116
mahmoodlab / SISH
Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering
pathology image-retrieval wsi-images histology image-search-engine histopathology mahmoodlab fish deep-learning vqvae bioimage-analysis bioimage-informatics
Language:Python 95
mahmoodlab / SurvPath
Modeling Dense Multimodal Interactions Between Biological Pathways and Histology for Survival Prediction - CVPR 2024
histology-transcriptomics mahmoodlab pathology pathology-genomics survpath interpretability pathology-representation pathways
Language:Python 95
mahmoodlab / MI-Zero
Visual Language Pretrained Multiple Instance Zero-Shot Transfer for Histopathology Images - CVPR 2023
mil pathology vision-language-pathology zero-shot-learning image-text-pathology zero-shot-pathology computational-pathology digital-pathology mahmoodlab quantitative-pathology
Language:Python 88
mahmoodlab / TANGLE
Transcriptomics-guided Slide Representation Learning in Computational Pathology - CVPR 2024
contrastive-learning mahmoodlab pathology tangle histology-transcriptomics pathology-genomics pathology-representation pathology-transcriptomics slide-representation-learning
Language:Python 69
mahmoodlab / HistoFL
Federated Learning for Computational Pathology - Medical Image Analysis
federated-learning pathology histology-images mahmoodlab
Language:Python 45
AshrithSagar / CLAM-Colab
Implementing https://github.com/mahmoodlab/CLAM on Google Colab
colab-notebook mahmoodlab
Language:Jupyter Notebook 1