whole-slide-image
There are 2 repositories under whole-slide-image topic.
binli123 / dsmil-wsi
DSMIL: Dual-stream multiple instance learning networks for tumor detection in Whole Slide Image
Language:Python 444mahmoodlab / TRIDENT
Toolkit for large-scale whole-slide image processing.
Language:Python 413lingxitong / MIL_BASELINE
A library that integrates different MIL methods into a unified framework
Language:Python 261dazhangyu123 / ACMIL
Attention-Challenging Multiple Instance Learning for Whole Slide Image Classification (ECCV2024)
Language:Python 118DIAGNijmegen / pathology-whole-slide-data
A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.
Language:Python 107ChongQingNoSubway / PDL
Code for the paper " PDL: Regularizing Multiple Instance Learning with Progressive Dropout Layers "
Language:Python 106Feather - Lightweight supervised slide foundation models (ICML 2025)
Language:Python 106HKU-MedAI / WSI-HGNN
[CVPR'23] Histopathology Whole Slide Image Analysis with Heterogeneous Graph Representation Learning
Language:Python 93huangzhii / nuclei.io
nuclei.io: Human-in-the-loop active learning framework for pathology image analysis
Language:Python 81miccaiif / WENO
Official PyTorch implementation of our NeurIPS 2022 paper: Weakly Supervised Knowledge Distillation for Whole Slide Image Classification
Language:Python 67Franblueee / torchmil
Deep Multiple Instance Learning library for Pytorch
Language:Python 62jgamper / compay-syntax
:microscope: Syntax - the arrangement of whole-slide-images and their image tiles to create well-formed computational pathology pipelines.
Language:Python 55imi-bigpicture / wsidicom
Python package for reading DICOM WSI file sets.
Language:Python 45liupei101 / AdvMIL
AdvMIL: Adversarial Multiple Instance Learning for the Survival Analysis on Whole-Slide Images (Medical Image Analysis 2024)
Language:Python 39Official PyTorch implementation of our MICCAI 2022 paper: DGMIL: Distribution Guided Multiple Instance Learning for Whole Slide Image Classification.
Language:Python 35smujiang / Re-stained_WSIs_Registration
Re-stained whole slide image alignment
Language:Python 35- kat
Zhengyushan / kat
The code for Kernel attention transformer (KAT)
Language:Python 35 [MICCAI'23] HIGT: Hierarchical Interaction Graph-Transformer for Whole Slide Image Analysis
Language:Python 31AICAN-Research / H2G-Net
🚀 H2G-Net: Segmentation of breast cancer region from whole slide images
Language:Jupyter Notebook 28uw-loci / demo_wsi_superres
WSISR: Single image super-resolution for Whole slide Imaging using convolutional neural networks and self-supervised color normalization.
Language:Python 26agentdr1 / LA_MIL
Implementation of LA_MIL, Local Attention Graph-based Transformer for WSIs, PyTorch
Language:Python 24gatsby2016 / Fast-WSI-Prediction
Unofficial implementation for ScanNet (a fast WSI prediction method) in PyTorch.
Language:Python 21Official Pytorch Code of Our Paper: Rethinking Multiple Instance Learning for Whole Slide Image Classification: A Good Instance Classifier is All You Need
Language:Python 21titizheng / PAMIL
Implementation of "Dynamic Policy-Driven Adaptive Multi-Instance Learning for Whole Slide Image Classification", (CVPR 2024 Highlight).
Language:Python 21Chrisa142857 / You-Only-Look-Cytopathology-Once
Codes available of a paper: An Efficient Cervical Whole Slide Image Analysis Framework Based on Multi-scale Semantic and Location Deep Features.
Language:Python 16daangeijs / simple_wsi_viewer
A simple web application for for viewing and navigating pathology whole-slide-images in your browser.
Language:JavaScript 16AEM: Attention Entropy Maximization for Multiple Instance Learning based Whole Slide Image Classification
Language:Python 16Python library for reading tiles from wsi tiff-files.
Language:Python 16okunator / cellseg_gsontools
Feature extraction from GEOJson nuclei and tissue segmentation maps
Language:Python 16[ICCV'23] ConSlide: Asynchronous Hierarchical Interaction Transformer with Breakup-Reorganize Rehearsal for Continual Whole Slide Image Analysis
Language:Python 15- MUSTANG
AmayaGS / MUSTANG
Multi-stain graph self attention multiple instance learning for histopathology Whole Slide Images - BMVC 2023
Language:Python 14 BiologyTools / BioGTK
A cross platform version of Bio library & program. Bio is a library & program for annotating, & editing various microscopy imaging formats using Bioformats supported images. including whole slide, pyramidal & series.
Language:C# 14sauravmishra1710 / Malaria-Detection-Using-Deep-Learning-Techniques
Malaria Parasite Detection using Efficient Neural Ensembles. Malaria, a life threatening disease caused by the bite of the Anopheles mosquito infected with the parasite, has been a major burden towards healthcare for years leading to approximately 400,000 deaths globally every year. This study aims to build an efficient system by applying ensemble techniques based on deep learning to automate the detection of the parasite using whole slide images of thin blood smears.
Language:Jupyter Notebook 12nadiabrancati / ABNN-WSI-Classification
Code to reproduce results of the Gigapixel Histopathological Image Analysis Using Attention-Based Neural Networks paper.
Language:Python 11- Language:Python 9
uzunb / deep-zoom-image-viewer
This is a viewer app that provides using to zoom and pan tools Deep Zoom Image (dzi) or Whole Slide Image (wsi) using Electron JS and OpenSeaDragon .
Language:JavaScript 9
