genomic-epidemiology

There are 2 repositories under genomic-epidemiology topic.

• pathongs

  indexofire / pathongs

  Pathogen NGS Documentary

  pathogenngsbioinformaticsgenomic-epidemiologyhzcdc
  131

• nextstrain / mpox

  Nextstrain build for mpox virus

  monkeypoxphylogeneticsaugurauspicebioinformaticsgenbankgenomic-epidemiologymetadatanextstrainpipelinevirus-evolutionmpoxpathogen
  Language:Python 39

• mpxv-lineages / lineage-designation

  Official place for proposals and details around monkeypox virus lineage designations

  bioinformaticsmonkeypoxmonkeypox-dataphylogeneticsgenomic-epidemiologyoutbreak-investigationvirus-evolutionmonkeypox-lineages
  Language:Python 19

• PROBIC / mGEMS

  mGEMS Genomic epidemiology with mixed samples

  plate-sweepgenomic-epidemiologymetagenomicstaxonomic-binninghigh-throughput-sequencingc-plus-plus
  Language:C++ 14

• laduplessis / SARS-CoV-2_Guangdong_genomic_epidemiology

  Data used for analyses in "Genomic Epidemiology of SARS-CoV-2 in Guangdong Province, China" (Lu et al., Cell, 2020) https://doi.org/10.1016/j.cell.2020.04.023

  sars-cov-2genomic-epidemiologybeast
  Language:R 3

• laduplessis / SARS-CoV-2_Northern_California_genomic_surveillance

  Data used for analyses in "Genomic Surveillance Reveals Multiple Introductions of SARS-CoV-2 into Northern California" (Deng et al., Science, 2020) https://doi.org/10.1126/science.abb9263

  sars-cov-2genomic-epidemiology
  Language:Python 2

• neherlab / BA286

  BA.2.86 project with Sigal lab

  bioinformaticscomputational-biologygenomic-epidemiologynextstrainphylogeneticssars-cov-2sars-cov-2-variantssnakemaketreetimevirus-evolution
  Language:Python 2

• BCCDC-PHL / auto-ncov

  Automated genomic analysis of SARS-CoV-2 sequence data

  automationgenomic-epidemiologymicrobial-genomics
  Language:Python 1

• BCCDC-PHL / plasmid-screen

  Screen plasmids for carbapenemase resistance genes, and classify using MOB Suite

  antibiotic-resistancebioinformatics-pipelinegenomic-epidemiologyplasmids
  Language:Python 1

• CoVaRR-NET / duotang

  Scripts and data for the CoVaRR-Net Pillar 6 notebook

  genomic-epidemiologysars-cov-2virus-evolution
  Language:HTML 1

• genomesurveillance / buqingyi_sciencewebsite

  Dr. Buqing Yi

  immunologyvirologymicrobiologyinfectious-diseasesgenomic-epidemiologymutation-surveillance
  0

• giffordlabcvr / RABV-GLUE

  A GLUE project developed to support genomic surveillance of Rabies Virus (RABV).

  virus-evolutionsequence-analysisrabiesglueepidemiologygenomic-epidemiology
  Language:JavaScript 0

• amcrisan / gevit_gallery_v2

  Gallery for GEViT Project

  data-visualizationgenomic-epidemiologyoutbreak-data-analysisrshiny
  Language:HTML

• BCCDC-PHL / civet

  Cluster Investigation & Virus Epidemiology Tool

  sars-cov-2genomic-epidemiologyphylogeneticsoutbreak-investigation
  Language:Python