drug-resistance

There are 0 repository under drug-resistance topic.

• jodyphelan / TBProfiler

  Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

  drug-resistancemycobacteriummycobacterium-tuberculosisngstuberculosis
  Language:Python 88

• PacificBiosciences / minorseq

  Minor Variant Calling and Phasing Tools

  minor-varianthaplotypesphasingdrug-resistancestatisticsnext-generation-sequencinglong-readpacbio
  15

• gambalab / DREEP

  Drug Response Estimation from single-cell Expression Profiles

  drug-repurposingdrug-resistancedrug-response-predictionsingle-cell-rna-seqgf-icf
  Language:C++ 8

• mbhall88 / head_to_head_pipeline

  Snakemake pipelines to run the analysis for the Illumina vs. Nanopore comparison.

  tuberculosissnakemakepipelinebioinformaticsnanoporeilluminadrug-resistancetransmissionclusteringdiagnostics
  Language:Jupyter Notebook 5

• ojcharles / MutationFeatures

  Generate a rich feature space describing all possible mutations in a given protein sequence (+ structure)

  bioinformaticsdeep-learningdrug-resistancemutationmutation-analysisproteinprotein-feature-extractionsequence-alignmentstructural-biology
  Language:Python 5

• kehauser / Predicting-resistance-of-clinical-Abl-mutations-to-targeted-kinase-inhibitors-using-FEP

  Data and analysis scripts used in Predicting resistance of clinical Abl mutations to targeted kinase inhibitors using alchemical free-energy calculations

  biotechnologymolecular-dynamicsmolecular-dynamics-simulationfree-energy-perturbationmmgbsakinaseskinase-activity-predictionskinase-inhibitorsdrug-discoverydrug-repurposingdrug-resistancedrug-protein-interactions
  3

• safinaARK / MTB-VCF

  Multipurpose tool for targeted variant calling of genetic polymorphisms in Mycobacterium Tuberculosis

  drug-resistancemycobacterium-tuberculosisvariant-calling
  Language:C 3

• AmirHoseinSafari / M.tuberculosis-dataset-for-drug-resistant

  The SNP and gene datasets of M. Tuberculosis for drug resistance prediction.

  tuberculosissnpgenedrug-resistancedrug-resistance-predictiondata
  1

• giffordlabcvr / HBV-GLUE

  A GLUE project for hepatitis B virus (HBV).

  microbial-genomicsdrug-resistancegenomicshepatitisgluereproducible-researchopen-sciencebioinformaticsstandardizationdockersequence-alignmentsequence-analysissequence-annotationvirus-evolution
  Language:JavaScript 1

• giffordlabcvr / HCV-GLUE

  A GLUE project for Hepatitis C virus (HCV)

  data-oriented-designvirus-genomesvirus-evolutiondrug-resistanceantiviral-resistancehepatitis-cmicrobial-evolutionmicrobial-genomicsbioinformatics-databases
  Language:F* 1

• meyer-lab / DDMC

  Clusters phosphoproteomics data based on a combination of the sequence information and abundance changes over conditions.

  drug-resistancecancerphosphoproteomicsacademic-project
  Language:Python 1

• MPB-mrcg / Pfalciparum_Mali_geo_temp_popgen

  This study assessed the spatial genetic variation in P. falciparum populations in Mali

  population-geneticsdrug-resistancepopulation-structure
  Language:R 1

• russelllab / kinaseResistance

  A method to predict activating, deactivating and resistance mutations in kinases

  bioinformaticsdrug-resistancekinasesmutationsactivating-mutationsflaskhidden-markov-modelmachine-learningrandom-forest-classifier
  Language:JavaScript 1

• ukalwa / worms-on-paper

  Flexible and disposable paper and plastic-based gel micropads for nematode handling, imaging and chemical testing

  nematodewormsmatlab-image-processing-toolboximage-processingcomputer-visionc-elegansmicrofluidicsdrug-resistance
  Language:MATLAB 1

• vvrahul11 / SIMS-Cancer-Drug-Recommendation-System

  Personalised scoring system for lung cancer patients that enables ranking of the activated interventional nodes.

  cancer-genomicscancer-patientsdrug-resistancedrug-targetsrshiny
  Language:R 1

• zhangle0127 / Global-Fund-Zhejiang-MDR-TB

  Examine treatment outcomes, and predict the incidence of Tuberculosis

  rtuberculosisdrug-resistancematlab
  Language:R 1

• aarmey / resistance-modeling

  The modeling code used for Manole et al, Canc Res, 2016.

  drug-resistancesystems-biologyacademic-project
  Language:MATLAB 0

• CDDEP-DC / Malaria_Vaccine-Averted_Burden

  Compartmental model projecting cases, resistant cases, and deaths averted in Africa from 2021-2030 with a vaccine similar to RTS,S.

  drug-resistancemalariamodelingvaccines
  Language:Python 0

• hyunsoo77 / BC_tamoxifen_response

  This repository is for ER+ breast cancer scRNA-seq data processing and figure generation.

  sc-rna-seqbreast-cancerdrug-resistancedrug-responsetamoxifen
  Language:Jupyter Notebook 0

• amatov / DyneinFunctionAnalysis

  drug-repurposingdrug-resistancemitotic-inhibitorssensitizing-drugsdynein-targetingdiophantine-equationsline-intersectionmeiotic-spindlecenter-of-massend-binding-proteinmicrotubule-growth-trajectoryspindle-pole-motionstathmin-oncoprotein-18system-of-linear-equationsmicrotubule-minus-endmicrotubule-nucleationmicrotubule-dynamicsmicrotubule-regulationfluorescent-speckle-microscopyminus-end-directed-motors
  Language:MATLAB

• giffordlabcvr / HBV-GLUE-WEB

  Web application for HBV-GLUE

  hepatitisvirus-evolutiondrug-resistanceopen-sciencedata-oriented-designgenomicsvirus-genomes
  Language:HTML

• giffordlabcvr / NCBI-HCV-GLUE

  Extension to HCV-GLUE - contains all published HCV data from NCBI, plus analysis logic for HCV genomes.

  virus-evolutionhepatitis-cmicrobial-genomicsbioinformaticsvirus-genomesbioinformatics-databasesantiviral-resistanceviral-genomics

• giffordlabcvr / PHE-HCV-DRUG-RESISTANCE

  HCV drug resistance extension based on collaboration with PHE.

  drug-resistancemicrobial-genomicsvirus-evolutionantiviral-resistancehepatitis-cdata-oriented-designpublic-health
  Language:HTML