virome

There are 0 repository under virome topic.

• kmcp

  shenwei356 / kmcp

  Accurate metagenomic profiling && Fast large-scale sequence/genome searching

  bigsicobsfracminhashkmermetagenomicsscaled-minhashsearchingsketchsketchingsyncmerstaxonomic-classificationtaxonomic-profilingvirome
  Language:Go 170

• mtisza1 / Cenote-Taker2

  Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)

  cenote-taker2metagenomesannotationgenbankvirusviromehhsearchhhblitsdiscoveryhallmarkvirus-discoveryvirus-sequencescenote-unlimited-breadsticksvirus-evolutionprophageprophage-prediction
  Language:Shell 57

• shandley / hecatomb

  hecatomb is a virome analysis pipeline for analysis of Illumina sequence data

  viromeviral-metagenomessnakemake
  Language:Python 41

• SegataLab / viromeqc

  ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes

  virome
  Language:Python 15

• DMnBI / ViBE

  ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data

  bertembeddingmetagenometransformersviromevirus-classification
  Language:Python 6

• poursalavati / SOVAP

  The Soil Virome Analysis Pipeline (SOVAP) is designed to process, analyze, and annotate viromics and metagenomics data using cutting-edge tools, providing valuable insights into the virome and microbial communities found in complex environments, such as soil ecosystems.

  metagenomicsmetatranscriptomicsviromeviromicsbioinformatics
  Language:Python 4

• hivlab / discover-virome

  discover-virome: identify and quantify viruses from metagenomic assemblies

  viromevirome-workflowsnakemakesnakemake-workflowmetagenomic-analysismetagenomic-classification
  Language:Python 3

• hivlab / quantify-virome

  quantify-virome: identify and quantify viruses from metagenomic shotgun sequences

  metagenomic-pipelinemetagenomicssnakemakesnakemake-workflowstaxonomyviromevirome-workflow
  Language:Python 3

• raw937 / SharkBay_virome

  microbialites stromatolites metagenomes metagenomics denovo-assembly

  microbialitestromatoliteviromevirusesssdnametagenomics
  Language:R 1

• shandley / decatomb

  Viral contig analysis (hecatomb-lite)

  viromemetagenomicspathogen-discovery
  Language:Python 1

• XuepengSun / TomatoVirome-web

  website of tomato virome database

  databasevirome
  Language:HTML 0