single-molecule

There are 1 repository under single-molecule topic.

barcoding
PacificBiosciences / barcoding
Lima - Demultiplex Barcoded PacBio Samples
barcode demultiplexing lima pacbio single-molecule
Language:R 65
usnistgov / mosaic
A modular single-molecule analysis interface
single-molecule time-series python nanopore signal-processing
Language:Python 37
Fluorescence-Tools / tttrlib
File format agnostic low level, high performance API to read and process time-tagged-time resolved (TTTR) data for single-molecule and image spectroscopy
ptu flim becker picoquant python single-molecule fluorescence fluorescence-correlation fluorescence-microscopy-imaging imaging
Language:C++ 18
tritemio / FRETBursts
Burst analysis software for smFRET. **Moved to OpenSMFS organization**
burst-analysis fluorescence fret jupyter-notebook python single-molecule spectroscopy
Language:Python 16
UU-cellbiology / DoM_Utrecht
Detection of Molecules plugin for ImageJ, Utrecht University
imagej-plugins fiji-plugin single-molecule java imagej utrecht-university
Language:Java 14
OpenSMFS / FRETBursts
Burst analysis software for single and multi-spot single-molecule FRET (smFRET) data.
single-molecule fret burst-analysis python jupyter-notebook fluorescence spectroscopy
Language:Jupyter Notebook 11
shadowk29 / CUSUM
Implements a modified version of the CUSUM algorithm for robust detection of step-like changes time-series data
c nanopore dna digital-signal-processing time-series-analysis feature-detection feature-extraction bioinformatics single-molecule
Language:C 11
RNA-FRETools / MASH-FRET
MATLAB package to analyze single-molecule FRET data
single-molecule fluorescence matlab fret simulation
Language:MATLAB 8
ianlmorgan / tweezepy
Single-molecule force spectroscopy calibration
force-spectroscopy single-molecule single-molecule-pulling
Language:Python 6
OpenSMFS / PyBroMo
A simulator for single molecule FRET experiments of freely diffusing particles.
simulator single-molecule fret brownian-motion
Language:Python 6
sponchcafe / SiMFS-core
Single Molecule Fluorescence Simulator Toolkit
simulation single-molecule fluorescence fluorescence-correlation
Language:C++ 4
AGPlested / ASCAM
ASCAM is Advanced Single Channel Analysis for Mac (and others)
electrophysiology-data single-molecule
Language:Python 3
Fluorescence-Tools / fit2x
Maximum likelihood fits for low photon count data - For active develeopment visit gitlab.peulen.xyz
fluorescence mle mle-estimation lifetime-analysis lifetime flim single-molecule
Language:C++ 3
Fluorescence-Tools / mdtraj_fps
mdtraj_fps ia a command line tool to calculate FRET observables form MD-trajectories
fluorescence single-molecule spectroscopy
Language:Python 2
alihashmiii / SMtrack
single molecule tracking
particle-tracking biophysics mathematica wolfram-language wolfram-mathematica single-molecule computer-vision
Language:Mathematica 1
BioPhysicsUP / Full_SMS
This is a repo for a Python based application to open SMS .h5 files, and perform the initial analysis and exporting.
spectroscopy analysis change-point-detection single-molecule fluorescence fluorescence-lifetime fluorescence-intensity fluorescence-spectra time-taged-time-resolved tttr tcspc time-correlated-single-photon intensity-level-grouping photon-burst-detection hdf5 python python3 pyqt5-gui lifetime-fitting
Language:Python 1
RNA-FRETools / rna-fretools.github.io
Single-moecule imaging and computation with RNA
single-molecule fret molecular-dynamics spectroscopy imaging microscopy
1
tritemio / multispot_paper
Data analysis for Ingargiola et al. PLOS ONE (2017) doi:10.1101/085027
jupyter-notebook fretbursts paper reproducibility single-molecule fluorescence confocal-microscope
Language:Jupyter Notebook 1
fregat17 / ONi-THE-WAY
A useful tool for working with Oxford Nanoimager microscope single-molecule localization data.
acquisition image image-processing nanoimager single-molecule single-molecule-imaging tracking
Language:Jupyter Notebook 0
onnodb / FDFIT
Fitting DNA single-molecule force-extension curves in MATLAB
dna fitting-algorithm physics physics-analysis science single-molecule
Language:MATLAB 0
pastranacl / dwell-time-analysis
Dwell time analysis of single-molecule force-spectroscopy data
biophysics single-molecule time-series
Language:MATLAB 0
rkurre / SPT-Simulator
Matlab software for simulation of two-dimensional single particle tracking (SPT) data sets.
diffusion oligomerization simulation single-molecule single-molecule-imaging single-molecule-localization single-particle-tracking
Language:MATLAB