Beast code in Giters

Wheeler Lab's repositories

nail

Nail is an Alignment Inference tooL

Language:RustBSD-3-Clause32 5 2

AvxWindowFmIndex

A fast, AVX2 and ARM Neon accelerated FM index library

Language:CBSD-3-Clause29 6 18

ULTRA

ULTRA Locates Tandemly Repetitive Areas

Language:C++BSD-3-Clause22 6 27

BATH

Better Alignments with Translated HMMER

Language:CNOASSERTION15 5 8

Mirage

Mirage generates multiple sequence alignments of proteoforms by mapping sequences back to their coding regions on the genome and then compressing those mappings into alignments.

Language:PerlBSD-3-Clause9 5 18

DIPLOMAT

Deep learning-based Identity Preserving Labeled-Object Multi-Animal Tracking (Beta)

Language:PythonBSD-3-Clause7 3 3

polyA

Automatically Adjudicate Any And All Arbitrary Annotations, Astutely Adjoin Abutting Alignments, And Also Amputate Anything Amiss (AAAAAAAAAAAAAAAA)

Language:PythonBSD-3-Clause7 6 19

NINJA

Nearly Infinite Neighbor Joining Application

Language:CMIT5 5 34

sufr

Parallel Construction of Suffix Arrays in Rust

Language:RustBSD-3-Clause500

VIBES

Viral Integrations in Bacterial genomES

Language:HTMLBSD-3-Clause5 4 7

A C library for reading/writing entire fasta files. Fasta files are loaded into internal buffers that store all headers and sequences such that each sequence and header can be found via a simple lookup function.

Language:CGPL-3.03 50

HAVAC

Hardware Accellerated Viterbi Additional Coprocessor (HAVAC) is an FPGA-accellerated implementation of the Single-segment Ungapped Viterbi algorithm for use in nucleotide sequence homology search

Language:C++BSD-3-Clause2 30