Wheeler Lab's repositories
AvxWindowFmIndex
A fast, AVX2 and ARM Neon accelerated FM index library
drug-sniffer
Sniffing out new drugs
FastaVector
A C library for reading/writing entire fasta files. Fasta files are loaded into internal buffers that store all headers and sequences such that each sequence and header can be found via a simple lookup function.
mmoreseqs-legacy
Pruned Forward-Backward implementation of profile HMM alignment
P7HmmReader
A simple C file reader for P7 profile HMM files generated by HMMER3 and other tools
trans-hmmer
Fork of HMMER, containing translated search variants: hmmsearcht and hmmscant
WASITAMATchISAW
Approximate palindromes lead to overstated false match rates in benchmarks using reversed sequences
Diviner
Using Mirage2 MSAs to uncover exons hiding in plain sight
easel-FraHMMER
Sequence analysis library used by Eddy/Rivas lab code
easel-FraHMMER-dead-end
Sequence analysis library used by Eddy/Rivas lab code
geomxrename
Rename files for use by GeoMX NGS Pipeline app on BaseSpace (Illumina)
nail-benchmarks
A collection of reproducible benchmarks for nail
slack-msgs
Backup Slack messages