There are 0 repository under rare-variant-analysis topic.
An R package for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using STAARpipeline
This package scales the huge gnomAD files to a SQLite database, which is easy and fast to query. It extracts from a gnomAD vcf the minor allele frequency for each variant.
The tutorial for performing association analysis of whole-genome/whole-exome sequencing (WGS/WES) studies using FAVORannotator, STAARpipeline and STAARpipelineSummary
An R package for summarizing and visualizing association analysis results of whole-genome/whole-exome sequencing (WGS/WES) studies generated by STAARpipeline
An R package for performing MultiSTAAR procedure in whole-genome sequencing studies
A collection of scripts for filtering annotated variant call format files
Collapsed Haplotype Pattern Method for Linkage Analysis of Next-Generation Sequencing Data
Indonesia Exome Rare Disease Variant Discovery Pipeline. Phenotype analysis part available on Streamlit and PyPi
Discover VNTR-associated DELs that are hard to find using Illumina reads
Repository to explain the projects currently being developed at Foundation29.
An R package for interpreting genetic variants according to the ACMG guidelines.
A Simple Tutorial for Analyzing Data Using the R Language
Pythonic version of RareComb
Code to use RetroFun-RVS
R package for the prioritization of functional rare genetic variants by integrating genomic annotations and RNA-seq