partial-order-alignment

There are 0 repository under partial-order-alignment topic.

NVIDIA-Genomics-Research / GenomeWorks
SDK for GPU accelerated genome assembly and analysis
genomics cuda gpu nvidia python-api alignment mapping poa partial-order-alignment
Language:Cuda 278
yangao07 / abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
simd partial-order-alignment banded-dp long-reads consensus-sequences multiple-sequence-alignment alignment-graph consensus-sequence gfa-format
Language:C 111
yangao07 / TideHunter
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
long-reads seed-and-chain multiple-sequence-alignment partial-order-alignment tandem-repeats
Language:C 25
Xinglab / TideHunter
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
long-reads multiple-sequence-alignment nanopore-sequencing partial-order-alignment seed-and-chain tandem-repeats
Language:C 18
Xinglab / abPOA
abPOA: an SIMD-based C library for fast partial order alignment using adaptive band
consensus-sequence banded-dp simd partial-order-alignment multiple-sequence-alignment long-reads
Language:C 12
AndreaGuarracino / WFPOA
An extension to the wavefront algorithm that generalizes it to work on directed acyclic sequence graphs
wfa partial-order-alignment wavefront alignment multiple-sequence-alignment msa consensus-sequences
Language:C 9
hitbc / TideHunter
TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain
long-reads tandem-repeats partial-order-alignment multiple-sequence-alignment nanopore-sequencing
Language:C 1