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Dieterich Lab (dieterich-lab)

Dieterich Lab

dieterich-lab

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Section of Bioinformatics and Systems Cardiology at the University Hospital Heidelberg

Location:Heidelberg, Germany

Home Page:https://dieterichlab.org

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Dieterich Lab's repositories

circtools

circtools: a modular, python-based framework for circRNA-related tools that unifies several functionalities in a single, command line driven software.

Language:PythonLicense:GPL-3.0Stargazers:23Issues:6Issues:73

JACUSA2

New version of JACUSA -> 2.0

Language:JavaLicense:GPL-3.0Stargazers:21Issues:5Issues:70

AppleDashboard

Dashboard for analysis of Apple Watch data with interactive graphics.

Language:PythonLicense:MITStargazers:10Issues:3Issues:0

Baltica

Baltica: integrated differential junction usage

Language:RLicense:MITStargazers:7Issues:4Issues:15

rp-bp

Rp-Bp is a Bayesian approach to predict, at base-pair resolution, ribosome occupancy and translation.

Language:PythonLicense:MITStargazers:7Issues:9Issues:134

medex

Intuitive Graphical User Interface for Medical Data Exploration

Language:PythonLicense:MITStargazers:4Issues:4Issues:26

AnonymizeAndSynthesize

Code used to produce the results presented in the publication "Anonymize or Synthesize? - Privacy-Preserving Methods for Heart Failure Score Analytics"

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ASyH

The Anonymous Synthesizer for Health Data

Language:PythonLicense:MITStargazers:3Issues:4Issues:8

FUCHS

FUCHS - FUll circle CHaracterization from rna-Seq

Language:PythonLicense:GPL-3.0Stargazers:3Issues:6Issues:23

JACUSA2helper

Auxiliary R package for assessment of JACUSA2 results

Language:RLicense:GPL-3.0Stargazers:3Issues:5Issues:22

mAFiA

Language:PythonStargazers:3Issues:4Issues:4

magnetiqueCode2022

Source code repository for informatics for life SP1

Language:Jupyter NotebookLicense:GPL-3.0Stargazers:3Issues:6Issues:0

QutRNA

Language:PythonLicense:MITStargazers:2Issues:4Issues:4

gEAR

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

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LINDA

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MiMB_JACUSA2_chapter

JACUSA2 - A framework for the mapping of RNA modifications

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nmdtxdb

Shiny application and code for the database for NMD targets

Language:RLicense:NOASSERTIONStargazers:1Issues:4Issues:29

PETGUI

We present PETGUI: A user-friendly interface for training and testing a language model using Pattern-Exploiting Training (PET).

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nmd-wf

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sodar-docker-compose

Setup SODAR using Docker Compose

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crc1550-inf-datamanagement

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cubi-isa-templates

CUBI ISA-Tab templates

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ImmunOMICS

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knowledge-graph-extraction-from-llms

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pbiotools

Bioinformatics utilities

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prRONTo

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pulseRTc

Our work on cardiac myocyte half lifes with a focus on transcripts / proteins

Language:PythonLicense:GPL-3.0Stargazers:0Issues:4Issues:2

scimodom

Language:JavaScriptLicense:AGPL-3.0Stargazers:0Issues:3Issues:117

sodar-server

SODAR: System for Omics Data Access and Retrieval

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xai-in-nlp

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