Guigo Lab

ggsashimi

Command-line tool for the visualization of splicing events across multiple samples

grape-nf

An automated RNA-seq pipeline using Nextflow

bamstats

A command line tool to compute mapping statistics from a BAM file

chip-nf

An automated ChIP-seq pipeline using Nextfow

geneidx

Nextflow pipeline for genome annotation of protein-coding genes

geneid

Predict genic elements as splice sites, exons or genes, along eukaryotic DNA sequences

tmerge

Merge transcriptome read-to-genome alignments into non-redundant transcript models

LyRic

Long RNA-seq analysis workflow

sQTLseekeR2

R package to detect splicing QTLs (sQTLs)

biogenome-portal

Biogenome data portal

sqtlseeker2-nf

An automated sQTL mapping pipeline using Nextflow

jbrowse-plugin-refget-api

A JBrowse 2 plugin to access servers implementing the refget API of GA4GH

gencode-cls-master-table

Results of the GENCODE pipeline to produce a collection of full length high quality transcripts

EPIraction

ansible-role-minknow-guppy-gpu

Ansible role to install and configure ONT MinKNOW with GPU support when basecalling using guppy

beacon-v2

Unified repository for the GA4GH Beacon v2 API standard

bioproject-genome-tracker

Retrieve all the INSDC public assemblies under a BioProject umbrella

file-stream-server

A little flask API to stream download files given a folder path

gene-predictions-web

Web portal for gene prediction data

geneid-param-resolver

Given a taxID returns the closest parameter file contained in the repository: https://github.com/guigolab/geneid-parameter-files

geneid-parameter-files

Repo with all the geneid parameter files

git-tech-session

Lab tech session on Git, GiHub and GitHub Actions

hugo-future-imperfect-slim

Multilingual Blogging Theme for Hugo | Check the Wiki for Documentation

rnaget-client

Demo client for the GA4GH rnaget API

rnaget-py-client

A python client to query the RNAget compliant servers

rnaget-r-client

A R package to query the RNAget compliant servers

rnaseq-course

Data for the RNAseq course at CRG

selenoprofiles-nf

selenoprofiles4 nextflow pipeline

spack

A flexible package manager that supports multiple versions, configurations, platforms, and compilers.

workflow-webhook

A Github workflow action to push to a webhook