EI-CoreBioinformatics

EI-CoreBioinformatics's repositories

mikado

Mikado is a lightweight Python3 pipeline whose purpose is to facilitate the identification of expressed loci from RNA-Seq data * and to select the best models in each locus.

Language:PythonLGPL-3.0101 11 330

portcullis

Splice junction analysis and filtering from BAM files

Language:C++GPL-3.042 4 67

reat

Robust Eukaryotic Annotation Toolkit

Language:PythonMIT18 5 25

minos

The labyrinth king judges your gene models.

Language:PythonLGPL-3.09 7 48

eirepeat

eirepeat - EI Repeat Identification pipeline

Language:PythonGPL-3.07 2 2

annotation-workshop-2021

Repository for preparing the workshop of April 2021

MIT3 5 4

annotation-workshop-2022

MIT1 50

annotation-workshop-2024

EI Annotation Workshop 2024

MIT1 30

barcode_retrieval

Primer-based barcode retrieval and counting from barcoded samples

Language:R1 50

eifunannot

eifunannot - EI AHRD functional annotation pipeline

Language:PythonGPL-3.01 3 3

qaa

Quality Assurance for Assemblies

Language:PythonMIT1 2 2

bgrrl

Language:Python02 29

CoassemblyPipeline

Snakemake pipeline for genome coassembly

Language:PythonMIT01 6

DToL_asm_hifi

Assembly (Hifi), Breaking (10X), Scaffolding (10X) and Polishing (10X) pipeline

Language:Python06 13

go-patterns

Curated list of Go design patterns, recipes and idioms

Language:GoApache-2.0000

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

Language:PythonGPL-3.0010

singlecellQC

Language:RMIT04 1

SkimSeqQC

Snakemake pipeline for QC of low-coverage skim-sequencing of G&T seq data

Language:PythonMIT03 3

AnnotF

AnnotF - A functional Annotation pipeline

Language:PerlMIT040

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell010

CPC2

Verbatim Copy of CPC 2.0

Language:Java010

CRISPRanto

CRISPR off-target analysis (i.e. CRISPRs second language)

Language:ShellMIT020

Pre_meet-annotation-workshop-2024

EI Annotation Workshop 2024 (Pre-meet)

MIT030