bixBeta

DESeq2-shiny

A shiny application to perform differential gene expression analysis of count data using DESeq2. The app also allows unsupervised exploration of data using PCA and hierarchical clustering.

TReX

RNA-seq, smRNA-seq, scRNA-seq & ATAC-seq workflows for @Cornell-Trex

deseq2shiny

R packge for deseq2shiny app

DESeq2Shiny2

DESeq2Shiny2 is an R shiny application to handle NGS count data and perform unsupervised clustering and Differential Gene Expression Analysis using DESeq2.

trex-website

website deploys for netlify

atac

nextflow ATACseq pipeline for GG02

GG02

dev environment for gg02 biohpc

gihub-website

netlify repository for genomics innovation hub website

nextflow

nextflow RNAseq pipeline for GG02

scRNA-WS24

Exercises for scRNA-seq Workshop TREX x BioHPC 2024.

quarto-deseq2-summary

quarto dashboard for SAR-Tools TREx summary

aalba-tree

bixbeta

citeseq-a

C4693 C7338 C8651rpt C9020

dey-3003

macpro

dev environment mac pro

mecfs-ratios

mecfs-tcells

cbsulm31:8009

netlify

split testing

pcaExploreR

quarto-markdowns

Quarto Reports for TREx Projects

quarto-web

Quarto website

sartools

Nextflow Pipeline for SAR_tools

SARTools1.6.6

Statistical Analysis of RNA-Seq Tools

scutils

utility functions for single cell + pseudobulk analyses

singularity-gg02

singularity-macpro2

symphony-sv4

lm31 symphony on sv4

TCELL_01

Pre-processing Seurat V5

trexdev