chipseq

There are 3 repositories under chipseq topic.

ncbi / pm4ngs
Project Manager for NGS data analysis
ngs-analysis ngs-pipeline cwl-workflow bioinformatics next-generation-sequencing rnaseq chipseq chipexo
Language:Python 25
BIMSBbioinfo / pigx
Pipelines in genomics
bisulfite-sequencing rnaseq dropseq chipseq snakemake guix genomics
Language:HTML 20
BIMSBbioinfo / pigx_chipseq
Pipeline for Analysis of ChIP-Seq data
chipseq guix pipeline reproducibility snakemake
Language:Python 9
boulderrinnlab / CLASS_2020
A pre-cooked version of our course
teaching chipseq data-science bioinformatics encode rinnlab cu-boulder bchm5631
Language:R 7
TheFraserLab / cisVar
cisVar scripts.
chipseq atac-seq pipeline published biology bioinformatics molecular-biology
Language:Python 5
cparsania / parcutils
An R package containing bioinformatics utility functions. Mostly related to RNAseq data analysis
bioinformatics utilities genomics rnaseq chipseq
Language:R 2
GeT-TRiX / MA_Trix_App
shiny shiny-server r transcriptomics css html chipseq heatmap pca venn-diagram markdown querying enrichment-analysis jquery json
Language:R 2
FrietzeLabUVM / TAP
Pipeline to process RNAseq and ChIPseq data. Outputs include gene counts, transcripts per million, alternate splicing events, SNP calls, and bigwigs. Supports both Docker and Singularity for all dependencies.
fastq-files pipeline rnaseq rdna chipseq bioinformatics
Language:Shell 1
lakhanp1 / chipmine
R package for exploratory analysis of ChIPseq data
chipseq exploratory-analysis chip-seq-data
Language:R 1
lakhanp1 / omics_utils
util scripts for various omics data analysis
rnaseq chipseq functional-enrichment multiomics
Language:R 1
mireia-bioinfo / workshop_bioinfo_ChIPseq
🖥️🧬 Materials for a Bioinformatics Workshop on ChIP-seq analysis, introduction to R and GenomicRanges.
bioinformatics-workshop chipseq genomic-ranges r
Language:HTML 1
dogmaticcentral / progesterone
Which ESR1 and PGR binding sites are functional?
progesterrone tf-binding-motif chipseq-region estrogen progesterone-resceptor estrogen-receptor transcription-factor-binding transcription-factor-binding-site hand2 transcription-control chipseq tad bed-files
Language:Python 0
lakhanp1 / markPeaks
Genomic regions (e.g ChIPseq peaks) annotation with TxDB object
annotation chipseq peak-annotation
Language:R 0
pd321 / chipseq
A snakemake based workflow for ChIPSeq data analysis
snakemake snakemake-workflows chipseq
Language:Python 0
sebastian-gregoricchio / SPACCa
Snakemake Pipeline for the Analyses of ChIP-seq data in Cancer samples
chip-seq chip-seq-analysis chip-seq-callers chip-seq-data chip-seq-peaks chipseq copynumber gatk gatk4 macs macs2 mutation mutation-analysis mutations normalization somatic-indels somatic-mutations somatic-variant somatic-variants
Language:Python 0
sethiyap / ChIPSeq
chip-seq chipseq chipseqanalysis chipseqdata rscript visualisation
Language:R 0
gauravcodepro / acetylation-factors
jax and numpy implementation for estimating the acetylation factors
acetylation bioinformatics chipseq chipseqanalysis chipseqdata datascience
Language:Python
LieberInstitute / dbFinder
dbFinder code
derfinder chipseq
Language:R
MahShaaban / chromatin_segmentation_r
Package demo slides, "Chromatin Segmentation Analysis in R"
chipseq chromatin-segmentation hmm
Language:HTML
MahShaaban / segmenterNote
A technical note to describe the segmenter package
chipseq chromatine-segmentation histone-modifications
Language:HTML
MahShaaban / targetFlow
target: An R Package to Predict Combined Function of Transcription Factors (workflow article)
chipseq r-package transcription-factors workflow
Language:TeX
pipaber / Multi-omics
This is a repository to show my experience analyzing different kinds of Omics data.
atacseq chipseq encode gwas methylation multi-omics tcga
Language:JavaScript