umi-count

There are 1 repository under umi-count topic.

berenslab / umi-normalization
Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
scrna single-cell-rna-seq single-cell-analysis umi-count umi-count-matrix normalization glm-pca negative-binomial-regression negative-binomial-model negative-binomial t-sne dimensionality-reduction gene-selection
Language:Jupyter Notebook 39
nunofonseca / fastq_utils
Validation and manipulation of FASTQ files, scRNA-seq barcode pre-processing and UMI quantification.
sequencing fastq validation ngs high-throughput-sequencing fastq-filterpair umi single-cell drop-seq 10x umi-count digital-gene-expression dge barcodes scrna-seq fastq-files fastq-validation
Language:C 34
jessievb / IDseq
R-package to analyse data from the immuno-detection by sequencing (ID-seq) technology.
umi dna-sequences umi-count barcode fastq-files umi-sequence antibody sequencing dna r rstudio rpackage
Language:R 4