UC Davis Bioinformatics Core Training Page's repositories
2020-Advanced_Single_Cell_RNA_Seq
Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory analysis. Instruction in introductory analysis will not be provided.
2020-Intro_Single_Cell_RNA_Seq
A workshop for biologists preparing to run their first single-cell RNA Seq experiment. No prior experience in bioinformatics necessary.
2020-mRNA_Seq_Workshop
Focused multi-day workshop covering the material needed for a successful RNA-Seq experiment.
2020-Genome_Assembly_Workshop
Explore the world of genome assembly and gain an understanding of the power and pitfalls of sequencing technologies and assembly techniques.
2020-Epigenetics_Workshop
ATAC-Seq, ChIP-Seq, and whole genome bisulfite! An introduction to analyzing some of the most popular types of epigenetic data.
2020-Variant_Analysis_Workshop
From SNP and structural variant calling to GWAS. Workshop cancelled due to public health concerns.
2020-Bioinformatics_Prerequisites_Workshop
An introduction to the basics of bioinformatics for biologists. No data analysis experience necessary.
2022-Nov-Introduction-To-Python-For-Bioinformatics
This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
2023-Dec-Introduction-To-Python-For-Bioinformatics
This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
2023-December-Single-Cell-RNA-Seq-Analysis
A three day hands-on workshop for researchers interested in single cell RNA-Seq
2023-December-Spatial
A one-day exploration of spatial transcriptomics
2023-February-Introduction-to-R-for-Bioinformatics
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
2023-July-Introduction-To-Python-For-Bioinformatics
This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
2023-May-Introduction-to-the-Command-Line-for-Bioinformatics
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
2024-March-Introduction-to-the-Command-Line-for-Bioinformatics
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
2022-December-Spatial-Transcriptomics
An introduction to spatial transcriptomics using 10x Genomics Visium datat.
2023-January-Introduction-to-the-Command-Line-for-Bioinformatics
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
2023-June-Advanced-Topics-in-Single-Cell-RNA-Seq-VDJ
A one-day exploration of a 10x V(D)J experiment for researchers with some knowledge of scRNA-seq experiments
2023-June-Introduction-to-R-for-Bioinformatics
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
2023-Oct-Introduction-to-R-for-Bioinformatics
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.
2023-October-Slurm-Seminar
A one and half hour seminar on how to use slurm on a cluster.
2023-September-Introduction-to-the-Command-Line-for-Bioinformatics
An introduction to command line basics for bioinformatics. Aimed at giving biologists with little-to-no data analysis experience the tools to successfully run bioinformatics workflows on the command line.
2024-April-Introduction-To-Python-For-Bioinformatics
This workshop consists of five half-day sessions, combining lecture and exercises to teach you the basics of programming (using python), with an emphasis on bioinformatics. Completion of this material will allow participants to get the most out of our other experiment-centric workshops. No previous python experience is necessary.
2024-March-Introduction-to-R-for-Bioinformatics
An introduction to the basic R programming for biologists. No data analysis experience necessary! Participants will gain skills necessary to run basic statistical analyses and generate figures in R.