j-andrews7

awesome-bioinformatics-benchmarks

A curated list of bioinformatics bench-marking papers and resources.

kenpompy

A simple yet comprehensive web scraper for kenpom.com.

Genotify

A minimal desktop app for easy and convenient gene annotation and lookup.

OneLinerOmics

One liner analyses and visualizations for bulk RNA-seq and ChIP-seq data

pytfmpval

Python bindings for the TFM-Pvalue program.

CRISPRball

An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.

EZscRNA

Convenient, high-level functions for EZ(-er) scRNA-seq analysis

iBET

interactive Bioinformatics Exploratory Tools

celldex

Collection of cell type reference datasets.

j-andrews7.github.io

Personal Website

KnowledgeDump

Gotta keep the brain empty to learn more. This is my easily digestible backup.

rosewater

Expression-aware gene assignment to ROSE output

simplifyEnrichment

Simplify functional enrichment results

strprofiler

A python package, command-line tool, and Shiny application to compare short tandem repeat (STR) profiles.

GEE

A dittoSeq-based Gene Expression Explorer

ASOspotter

A simplistic Shiny app for observing mutation data.

bioconda-recipes

Conda recipes for the bioconda channel.

CountyAmenitiesExplorer

Code for a website to serve, explore, and visualize US county amenities and cost of living.

dittoSeq

Color blindness friendly visualization of single-cell and bulk RNA-sequencing data

dittoViz

Color blindness friendly visualization of any data in a data.frame format. Like dittoSeq, but not omics-structure restricted

j-andrews7

Personal README

learngenomics.dev

A guided, intuitive introduction to genomics for software engineers. Curated by the community.

MACS

MACS -- Model-based Analysis of ChIP-Seq

rustbucket

Dumping ground for rust-backed R functions that I want to zoom.

ShinyForResearchersWorkshop

A no-nonsense introduction to Shiny for researchers, clinicians, statisticians, and scientists of all varieties, with a focus on interactive reports and re-usability.

SingleR

Clone of the Bioconductor repository for the SingleR package.

singularity-r

R in a Singularity container

strprofiler_shiny

tooltime

HURGH HURGH HURGH

university

Educational materials for the St. Jude Cloud project.