j-andrews7

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St. Jude Children's Research Hospital

Memphis, TN

j-andrews7.github.io

Jared Andrews's repositories

awesome-bioinformatics-benchmarks

A curated list of bioinformatics bench-marking papers and resources.

GPL-3.0303 18 43

kenpompy

A simple yet comprehensive web scraper for kenpom.com.

Language:PythonGPL-3.070 11 44

Genotify

A minimal desktop app for easy and convenient gene annotation and lookup.

Language:JavaScriptNOASSERTION54 6 33

OneLinerOmics

One liner analyses and visualizations for bulk RNA-seq and ChIP-seq data

Language:RGPL-3.07 30

pytfmpval

Python bindings for the TFM-Pvalue program.

Language:C++GPL-3.07 3 2

CRISPRball

An interactive exploration/visualization platform to help you lift the fog from your CRISPR analyses.

Language:RMIT5 3 16

EZscRNA

Convenient, high-level functions for EZ(-er) scRNA-seq analysis

Language:RGPL-3.05 3 1

iBET

interactive Bioinformatics Exploratory Tools

Language:RNOASSERTION5 4 9

Pipelines

Because backups and revision history are good things.

Language:Python200

celldex

Collection of cell type reference datasets.

Language:R1 20

j-andrews7.github.io

Personal Website

Language:HTML1 30

KnowledgeDump

Gotta keep the brain empty to learn more. This is my easily digestible backup.

CC0-1.01 30

rosewater

Expression-aware gene assignment to ROSE output

Language:PythonGPL-3.01 30

STRprofiler

A python package, command-line tool, and Shiny application to compare short tandem repeat (STR) profiles.

Language:HTMLMIT1 5 14

GEE

A dittoSeq-based Gene Expression Explorer

Language:RGPL-3.0030

Arduino-Bluetooth-Basic

Control a LED using your smartphone via Bluetooth (Does not support BLE)

Language:Java020

ASOspotter

A simplistic Shiny app for observing mutation data.

Language:RNOASSERTION020

bioconda-recipes

Conda recipes for the bioconda channel.

Language:Shell020

Cards-Data-Visualizations

Advanced stats and shoddy writting.

Language:Jupyter NotebookGPL-3.0030

CountyAmenitiesExplorer

Code for a website to serve, explore, and visualize US county amenities and cost of living.

Language:PythonGPL-3.0020

dittoSeq

Color blindness friendly visualization of single-cell and bulk RNA-sequencing data

Language:RMIT020

dittoViz

Color blindness friendly visualization of any data in a data.frame format. Like dittoSeq, but not omics-structure restricted

Language:RNOASSERTION010

j-andrews7

Personal README

Language:R020

learngenomics.dev

A guided, intuitive introduction to genomics for software engineers. Curated by the community.

Language:JavaScriptNOASSERTION020

ncaahoopR

An R package for working with NCAA Basketball Play-by-Play Data

Language:RMIT020

rustbucket

Dumping ground for rust-backed R functions that I want to zoom.

Language:RustNOASSERTION020

ShinyForResearchersWorkshop

A no-nonsense introduction to Shiny for researchers, clinicians, statisticians, and scientists of all varieties, with a focus on interactive reports and re-usability.

Language:RMIT020

SingleR

Clone of the Bioconductor repository for the SingleR package.

Language:RGPL-3.0020

tooltime

HURGH HURGH HURGH

Language:RMIT030

university

Educational materials for the St. Jude Cloud project.

Language:JavaScript020