umi-count-matrix

There are 1 repository under umi-count-matrix topic.

berenslab / umi-normalization
Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Genome Biology
scrna single-cell-rna-seq single-cell-analysis umi-count umi-count-matrix normalization glm-pca negative-binomial-regression negative-binomial-model negative-binomial t-sne dimensionality-reduction gene-selection
Language:Jupyter Notebook 40
yanailab / celseq2
Generate the UMI count matrix from CEL-Seq2 sequencing data
cel-seq2 single-cell-rna-seq bioinformatics-pipeline snakemake umi-count-matrix spatial-transcriptomics
Language:Python 19