rrna

There are 0 repository under rrna topic.

• tseemann / barrnap

  :microscope: :leo: Bacterial ribosomal RNA predictor

  rnahmmerrnammerhmm-modelrrnaannotationsribosomal
  Language:Perl 206

• nf-core / ampliseq

  Amplicon sequencing analysis workflow using DADA2 and QIIME2

  amplicon-sequencing16snf-corenextflowpipelineworkflowmetagenomicsrrna18sitsmetabarcodingqiime2ednataxonomic-classificationilluminaiontorrentmicrobiomepacbiotaxonomic-profiling
  Language:Nextflow 157

• pr2database / pr2database

  Protist Ribosomal Reference database (PR2) - SSU rRNA gene database

  18s-rrnadatabaseeukaryotesmetabarcodingrrnataxonomy
  Language:R 76

• epruesse / SINA

  SINA - Reference based multiple sequence alignment

  rrnaalignmentsequence16ssilvabioinformatics
  Language:C++ 40

• bonsai-team / matam

  Mapping-Assisted Targeted-Assembly for Metagenomics

  metagenomicsassemblybioinformaticsrrna
  Language:Python 19
• pseudoU-BIDseq

  y9c / pseudoU-BIDseq

  🧪 New pipeline for detecting pseudouridine modification on RNA (BID-seq, etc)

  rnapseudouridinemodificationsingle-basemrnarrnaepitranscriptomeepitranscriptomics
  Language:Python 11

• ifremer-bioinformatics / samba

  Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

  16s18sednametabarcodingnextflowpipelinerrnaworkflow
  Language:Nextflow 10

• carden24 / V-Xtractor

  Repository for V-Xtractor an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences

  bioinformaticsrrnamicrobiome-analysisopen-source16s
  Language:Perl 6

• fallerlab / Ribo-ODDR

  Ribo-seq focused Oligo Design pipeline for experiment-specific Depletion of Ribosomal RNAs

  rrnaribosome-profilingriboseqrna-seqoligo-designbioinformaticsbioinformatics-pipelinecomputational-biologybioinformatics-scriptsbioinformatics-toololigonucleotide
  Language:Python 6

• nlabrad / CIMS-Cyanobacterial-ITS-motif-slicer

  A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.

  16s-rrna16s-seq23sbacteriabioinformaticscyanobacteriaphycologyrnarnafoldingrrna16s-23srna-foldingphylogenyhelp-wanted
  Language:Python 3

• pipecraft2 / pipecraft

  PipeCraft2 is a Graphical User Interface (GUI) for various metabarcoding pipelines

  coidockermetabarcodingpipelinerrna
  Language:Shell 1

• YaccConstructor / YC.Bio

  Tools for metagenomic assembly processing.

  fsharpbioinformaticsmetagenomicsmetagenomic-analysisparsing16srrnasecondary-structure
  Language:F# 1

• zadyson / OTUStalker

  OTUStalker is a small software tool designed to be compatible with QIIME (v1.8.0). Its purpose is to retrieve data pertinent to a single taxonomic group, from a larger (presumably mixed) data set, therefore allowing the user to concentrate their efforts on the specific taxa of interest. In effect, OTUStalker is taking the place of a targeted PCR primer set. OTUStalker requires a number of output files generated by QIIME (v1.8.0), and creates new files allowing re-analysis of the data set using QIIME.

  16smetagenomicspcrjavaguirrnardnaotu
  Language:Java 0

• felixgrunberger / rRNA_maturation

  archaeananopore-sequencingrrna
  Language:R

• mjy / psy

  Perl libraries for handling rRNA annotated multiple sequence alignments, and more

  rrnaphylogenysecondary-structureperl
  Language:Perl