archaea

There are 0 repository under archaea topic.

• GTDBTk

  Ecogenomics / GTDBTk

  GTDB-Tk: a toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.

  taxonomyspecies-assignmentsphylogeneticsarchaeabacterianomenclaturebioinformaticsmetagenomics
  Language:Python 440

• EngqvistLab / Tome

  A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima

  archaeabacteriabioinformaticsenzymeseukaryotesmachine-learningmicrobiologytemperature-data
  Language:Python 47

• EngqvistLab / orgtools

  A library to get information on organisms and UniProt identifiers. This includes growth temperature, growth ph, pfam domains, taxonomic lineage.

  archaeabacteriabioinformaticseukaryotesmicrobiologyphylogeneticstaxonomic-identifierstaxonomic-lineages
  Language:Python 2

• sabahzero / Puerto-Nuevo_Coastal-Microbial-Ecology_16S-18S-Workflow_UlHasan-etal

  This is a microbial amplicon sequence (16S and 18S iTag) data and analyses pipeline corresponding to the manuscript, "Community ecology across bacteria, archaea and microbial eukaryotes in the sediment and seawater of coastal Puerto Nuevo, Baja California" for public benefit and usage.

  microbiologysequencecoastalecosystembacteriaarchaeaeukaryotesstatisticspermanovaanovataxonomyamplicon
  2

• brinkmanlab / MicrobeDB

  Curated mirror of RefSeq Microbial Genomes. Available via CVMFS repository.

  cvmfsmicrobencbirefseqgenbankbacteriaarchaeadatabase
  Language:Shell 1

• bwmr / microbiome_morphology

  Code and Data related to Wimmer and Morais et al (2023)

  archaeabacteriacryo-etecologymicrobiology-publicationrvegan
  Language:R 1

• computer-aided-biotech / iMN22HE

  Methanoperedens nitroreducens genome-scale metabolic model.

  genome-scale-modelssystems-biologymetabolismarchaeamethanotrophy
  Language:Jupyter Notebook 1

• leylabmpi / CoreGenomePrimers

  Design clade-specific primers targeting a pan-genome core gene

  archaeabacteriabioinformaticsprimer-designprimers
  Language:Jupyter Notebook 1

• leylabmpi / traitar3

  archaeabacteriagenomesmachine-learningphenotypes
  Language:Python 1

• raw937 / SharkBay_archaea

  stromatolitessharkbaymicrobialitesarchaeametagenomics
  Language:R 1
• POUR

  CALeDNA / POUR

  biodiversitylosangelesriverenvironmentaldnadnametabarcodingmicrobesplantsanimalsprotistsalgaefungibacteriaarchaeavertebratesinvertebrates
  0

• Matthias-Gruber / Final-Project-Softwareentwicklung

  Final Project WS2019: Alexander Amberger, Matthias Gruber, Simone Zimmerl

  archaeabacteriagenomeseukaryotacogs
  Language:Python 0

• felixgrunberger / rRNA_maturation

  archaeananopore-sequencingrrna
  Language:R

• naturepoker / Telehalo

  A spin on the Tele* scripts, this time processing and comparing protein sequence input against those of Halobacterium genus

  amateur-researcharchaeabiologyevolutionhalobacteriaphylogeny
  Language:Shell

• terrimporter / MahmoudiEtAl2013

  Code that was used to generate figures for the Mahmoudi et al., 2013 publication

  metabarcoding16sbacteriaarchaeafungiecodistnmdsits
  Language:R