18s

There are 0 repository under 18s topic.

• nf-core / ampliseq

  Amplicon sequencing analysis workflow using DADA2 and QIIME2

  amplicon-sequencing16snf-corenextflowpipelineworkflowmetagenomicsrrna18sitsmetabarcodingqiime2ednataxonomic-classificationilluminaiontorrentmicrobiomepacbiotaxonomic-profiling
  Language:Nextflow 160

• itsmisterbrown / microfiltR

  accessory functions for processing microbial community data

  microbiomemicrobiome-analysismarker-gene-analysis16sphyloseq18s
  Language:R 12

• ifremer-bioinformatics / samba

  Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

  16s18smetabarcodingworkflowpipelinerrnanextflowedna
  Language:Nextflow 10

• adriaaula / dada2_guidelines

  A repository with a general dada2 pipeline for amplicon processing

  dada216s18samplicon
  Language:R 8

• terrimporter / 18SClassifier

  This repository contains 18S reference sets that can be used with the RDP Classifier to classify 18S rDNA metabarcode sequences.

  metabarcoding18srdnardpclassifier
  Language:Perl 3

• vaulot / Ribeiro_CARBOM_ISME_2018

  Supplementary files for Ribeiro et al. ISME 2018

  phytoplanktonmetabarcodingnifh18sbrazilmicrobial-communities
  Language:Shell 3

• GenomicaMicrob / chimera_detector

  A simple script to detect chimeric sequences in 16S/18S metagenomic samples.

  16smetagenomics18schimeramicrobial-ecology
  0

• GenomicaMicrob / metagenomic_pipeline

  Description of the metagenomic pipeline we have for analysis of 16S and 18S amplicon NGS

  metagenomics16smicrobial-ecologychimeraclassifierdatabase18s
  0

• nioo-knaw / hydra

  Pipeline for amplicon sequencing projects. OTUs can be build with various methods (usearch,vsearch,uparse,swarm) and classified using the RDP Classifier and SINA. Final output is a BIOM file for downstream processing (Phyloseq/R)

  snakemakeamplicon-sequencing16sits18smetagenomicsmetagenomic-analysis
  Language:Python 0

• GenomicaMicrob / mg_classifier

  Super fast script for classifying metagenomic 16S/18S sequences

  metagenomic-analysis16s18smicrobial-ecologyclassifier
  Language:Perl

• terrimporter / JesseHoage2018

  This repository contains the scripts used to process Illumina MiSeq 18S, ITS2, and CO1 metabarcodes for Jesse Hoage's Master's thesis (2018). The ammended CO1 reference set is also included here (CO1 Classifier v2.1).

  metabarcoding18srdnacoimtdnaits2rdpclassifier
  Language:Perl