epitranscriptomics

There are 0 repository under epitranscriptomics topic.

comprna / CHEUI
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
deep-neural-networks epitranscriptomics nanopore rna deep-learning rna-methylation
Language:C++ 30
pseudoU-BIDseq
y9c / pseudoU-BIDseq
🧪 New pipeline for detecting pseudouridine modification on RNA (BID-seq, etc)
epitranscriptome epitranscriptomics modification mrna pseudouridine rna rrna single-base
Language:Python 12
comprna / R2Dtool
Analyse RNA feature distributions.
epitranscriptomics long-read nanopore rna-seq transcriptomics
Language:Jupyter Notebook 8
m6A-SACseq
y9c / m6A-SACseq
🧪 Optimized protocol for m6A-SAC-seq
m6a modification rna ngs docker pipeline epitranscriptomics sac-seq single-base epitranscriptome
Language:Python 8
kandarpRJ / epidecodeR
Online version of tool is live
epitranscriptomics epigenetics differential-expression genomics genomics-visualization
Language:R 5
rnajena / magnipore
Magnipore: Differential single nucleotide changes of ONT signals
comparative-analysis epigenomics epitranscriptomics ont oxford-nanopore raw-signal
Language:Red 5
CatMOD / CatMOD
CatMOD is a CatBoost-based feature-concatenation model for RNA modification recognition from ONT DRS.
drs epitranscriptomics ml modification ont
Language:Python 3
mevers / RNAModR
Repository for the R package RNAModR
epitranscriptomics rna-modifications
Language:R 3
chosenobih / pamlinc
High-throughput Workflow for Processing and Analyzing RNA-Seq Data
epitranscriptomics high-throughput rna-seq lincrna rna-modification bioinformatics ngs
Language:Shell 2
y9c / m5C-UBSseq
Ultrafast bisulfite
bioinformatics epitranscriptome epitranscriptomics rna
Language:Python 2
comprna / CHEUI-public
Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing
deep-learning deep-neural-networks epitranscriptomics nanopore rna rna-methylation
1
harrlol / HAMRLNC
High-throughput pipeline for modified mRNA annotation and long non-coding RNA annotation
bioinformatics docker epitranscriptomics pipelines rna-seq
Language:Shell 1
harrlol / hamrtools
handful of tools that might be needed before or after HAMR
bioinformatics bioinformatics-pipeline epitranscriptomics rna-modifications rna-seq
Language:R 1
monimaanam / Modomics_Decoder
Annotates modomics RNA sequences for easy viewing of RNA modifications and nucleotide positions.
epitranscriptomics modomics rna first-contributions practice-project rna-modifications rna-sequence
Language:Python 1
BaccarelliLab / Main
Guide for the Baccarelli Lab GitHub
epigenomics methylation illumina-data kernel-regression snp-genotyping snps columbia-university dna-methylation epitranscriptomics epigenetics publichealth machinelearning-r data-analysis toxicology environmental-exposures health epidemiology-analysis r-programming
0
JiejunShi / BASAL
Base-conversion Sequencing Aligner
bioinformatics epigenomics epitranscriptomics
Language:C 0
harrlol / hamrbox
A bundle of HAMRtools for High-throughput RNA modification prediction and analysis
bioinformatics bioinformatics-pipeline epitranscriptomics ngs rna-modifications rna-seq
Language:R
metamaden / PrImiR
Database of pairwise consensuses for miR-mRNA target interactions
mirna target-prediction mirna-mrna-interaction mirna-targets mirna-database computational-biology systems-biology epitranscriptomics transcriptomics post-transcriptional-regulation target-scan miranda mirdb mirtarbase mirmap
Language:R