16s-seq

There are 0 repository under 16s-seq topic.

Gibbons-Lab / isb_course_2022
Materials and presentation for the 2022 ISB Microbiome course.
microbiome 16s-seq analysis metabolic-models microbial-ecology qiime2 sequencing systems-biology
Language:Jupyter Notebook 25
Gibbons-Lab / isb_course_2023
Materials and presentation for the 2023 ISB Microbiome course.
16s-seq analysis metabolic-models microbial-ecology microbiome pathogens qiime2 sequencing systems-biology hacktoberfest
Language:Jupyter Notebook 18
micom-dev / q2-micom
A Qiime plugin for MICOM.
qiime2 metabolic-models 16s-seq hacktoberfest
Language:Python 10
bodeolukolu / Qmatey
Quantitative metagenomic alignment and taxonomic exact-matching
bioinformatics metagenomics 16s-seq its-sequence microbiome exact-matching shotgun-metagenomics reduced-representation-sequencing strain-level-profiling compositional-correlation
Language:Shell 6
cafferychen777 / MicrobiomeStat-Turtorial-Professional-Version
MicrobiomeStat Tutorial Repository: This is a comprehensive resource for learning how to use the MicrobiomeStat package. It provides a step-by-step guide to effectively analyze complex microbiome data.
16s 16s-rrna 16s-seq analysis data-analysis metagenomes metagenomic-analysis metagenomic-pipeline metagenomics microbiome microbiome-analysis microbiome-analysis-pipelines microbiome-data microbiome-workflow omics omics-data omics-data-analysis omics-data-integration visualization
3
Headonpillow / 16S_analysis
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
16s 16s-seq dada2 illumina illumina-sequencing metagenomics microbial-ecology microbiota phyloseq pipeline
Language:R 3
nlabrad / CIMS-Cyanobacterial-ITS-motif-slicer
A tool to identify and extract the commonly used ITS folding motifs from a 16s-23s rRNA sequence.
16s-rrna 16s-seq 23s bacteria bioinformatics cyanobacteria phycology rna rnafolding rrna 16s-23s rna-folding phylogeny help-wanted
Language:Python 3
aobermayer4 / ComputationalGenomics
Repository containing various RNA-seq, ChIP-seq, and 16S-seq analysis pipelines run through R
16s-seq bioconductor chip-seq deseq ggplot2 ngs-analysis r rna-seq
Language:R 0
mmpust / IPMN-repository
R session, R scripts, and additional resources accompanying the BMJ Gut paper
16s-seq ipmn microbiome-analysis pancreas publication-repository
Language:R 0
TraxlerLab / BlodgettProject
Code associated with the following manuscript, currently in review: M.S. Fischer, N.J. Patel, P.J. De Lorimier, M.F. Traxler "Prescribed fire selects for a pyrophilous soil subcommunity in a northern California mixed conifer forest"
amplicon-sequencing 16s-seq community-ecology its-sequence prescribedfire
Language:R 0
vanessapino / AUMicrobio
AU microbiome molecular exploratory analyses for NSW
bacteria microbiome-analysis soil 16s-seq fungi its its-sequence
Language:R 0
barbarahelena / vsearchpipeline
VSEARCH pipeline for 16S seq data
16s-seq microbiota vsearch
Language:Nextflow
BenoitPAIX / Dactylospongia_metachromia_microbiome
A R script for the study of the prokaryotic community of the sponge Dactylospongia metachromia
16s-seq bioinformatics-analysis holobiont metabarcoding microbiome sponge
Language:R