Erick Cardenas's repositories
V-Xtractor
Repository for V-Xtractor an open-source, high-throughput software tool to identify and extract hypervariable regions of small subunit (16S/18S) ribosomal RNA gene sequences
BCREGMEGD_Microbiome_sequencing_workshop_2020
Repository for the 2020 BCREGMED microbiome sequencing workshop
bhattlab_workflows
Computational workflows for metagenomics tasks, by the Bhatt lab
carden24.github.io
Erick Cardenas Personal Webpage
CCMetagen
Microbiome classification pipeline
cosmosid-cli
Command line client and Python libraries for CosmosID API
DRAM
Distilled and Refined Annotation of Metabolism: A tool for the annotation and curation of function for microbial and viral genomes
elecciones-peru-2021-ONPE
resultados (data) de elecciones 2021 y cĂłdigo para extraer data de la ONPE
funprofiler
A functional profiler for metagenomes using FracMinHash
hostile
Hostile towards host reads
HumGut
A healthy human gut genome collection
Krak
Snakemake for flexitaxd and Kraken2
LRSW-Taxonomic-Profiling-Tutorial
Perform taxonomic profiling analyses for long-read shotgun metagenomic datasets. Developed for the Long Read Sequencing Workshop 2022 at the Jackson Laboratory.
MeSS
Metagenomic Sequence Simulator
MiCoP
MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.
nanoq
Minimal but speedy quality control for nanopore reads in Rust :bear:
RESCUE
Resolving Species Level Classification Using Emu
ShotgunMG
This repository contains the code for ShotgunMG, a Nextflow bioinformatic pipeline for high-resolution metagenomics
state-of-the-card-2021
State of the CARD 2021 Presentations & Demonstrations
strainest
StrainEst - abundance estimation of strains
SUPER-FOCUS
A tool for agile functional analysis of shotgun metagenomic data
vcflib
C++ library and cmdline tools for parsing and manipulating VCF files
yacrd
Yet Another Chimeric Read Detector