18s-rrna

There are 0 repository under 18s-rrna topic.

• pr2database / pr2database

  Protist Ribosomal Reference database (PR2) - SSU rRNA gene database

  rrnadatabaseeukaryotesmetabarcodingtaxonomy18s-rrna
  Language:R 76

• pr2database / pr2-primers

  Scripts for paper Vaulot et al. 2022

  database18s-rrnaprimerseukaryotestaxonomymetabarcoding
  Language:R 5

• tianrenmao / 16S-18S-ITS-ASAP

  This is an automatic pipeline for analysis of amplicon sequence data including 16S, 18S and ITS. It wraps QIIME commands and complements them with additional analysis where QIIME is not good at, such as combine multiple sequencing runs, OTU clustering and chimeric removal with UP ARSE, alignment filtering with Gblock, removing Chloroplast sequences.

  16s-rrna18s-rrnaits-sequenceamplicon-sequencingqiimewrapperautomatic-pipeline
  Language:Perl 3

• dschnei1 / ngs4ecoprod

  NGS4ECOPROD - An easy-to-use conda environment and pipelines for metagenome sequence analysis

  16s-rrna18s-rrnametagenomicsilluminananopore
  Language:Shell 2

• pr2database / metapr2-shiny

  Shiny application to access metaPR2 database

  18s-rrnametabarcodingrshiny-apps
  Language:R 2

• cmlglvz / datasets

  Datasets and statistics code used for "Objective 1" for PhD Thesis

  bioinformaticsmicrobiologyecologycoastalpollutionoceans18s-rrnapicophytoplanktoniceukaryotesppepicoeukaryoteschilemicroecology
  Language:HTML 0

• clarkevansteenderen / DactyID

  An R Shiny application to identify cochineal genetic sequences for 12S rRNA, 18S rRNA, or COI.

  dactylopiuscochinealgenetic-barcodescoi18s-rrna12s-rrna
  Language:R

• Mathilg / UPDx_workflow

  A custom bioinformatic workflow for UPDX (Universal Parasite Detection assay) sequences analysis.

  parasites18s-rrnametabarcodinglinuxrbioinformaticstaxonomymetagenomicsmicrobiomeillumina
  Language:R