silva

There are 1 repository under silva topic.

epruesse / SINA
SINA - Reference based multiple sequence alignment
rrna alignment sequence 16s silva bioinformatics
Language:C++ 40
pirovc / multitax
Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)
taxonomy ncbi gtdb silva greengenes open-tree-taxonomy ott python tree pyhton-library biological-taxonomies taxonomies bioinformatics
Language:Python 35
Arkadiy-Garber / Taxonsluice
Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables
otu amplicon contamination silva environmental
Language:Python 2
k8hertweck / FieldLabComparison
microbiome analysis of ant colonies
mothur silva r otu-table microbiome-analysis
Language:Shell 2
PhyloMAF
mmtechslv / PhyloMAF
Next Generation Phylogenetic Microbiome Analysis Framework
microbiome phylogenetics taxonomy otu-table bioinformatics 16s-rrna taxonomic-classification taxonomy-assignment greengenes silva ott phylogenetic-trees microbiome-analysis
Language:Python 1
adrianagiongo / RhizoWheat-ms1
Workflow and R scripts for Giongo et al. (2024)
amplicon-sequencing illumina-sequencing microbiome-analysis r silva
Language:TeX 0
GSimas / gsimas.github.io
♜Personal Github Webpage
webpage github page gsimas silva gustavo io html css free html5 templates js javascript 404 voltage boostrap glitch art culture
Language:HTML 0
mmtechslv / taxamatcher
Correlates target taxonomy(i.e consensus lineages) with a reference taxonomy such as Greengenes, SILVA, etc.
taxonomy taxon taxa lineage taxonomy-assignment greengenes silva taxonomic-classification bioinformatics metagenomics
Language:Python 0
Silvacosta / gustavo
html silva
Language:HTML 0
aortiz24 / FieldLabComparison
microbiome analysis of ant colonies
mothur silva r otu-table microbiome-analysis
Language:Shell
glickmac / OTU_Groupings
biom greengenes merging microbiome otus qiime silva workflow
Language:Shell