Chang Y's repositories
pseudoU-BIDseq
🧪 New pipeline for detecting pseudouridine modification on RNA (BID-seq, etc)
myneovim.lua
lua based nvim config
bullet-theme.zsh
:bullettrain_side: An oh-my-zsh shell theme based on the Powerline Vim plugin
lc96parser
convert roche lc96p file into RDML file and show CT values in Excel format
m5C-UBSseq
Ultrafast bisulfite
blog.yech.xyz
Will start blogging someday
cutadapt
Cutadapt removes adapter sequences from sequencing reads
datacache
Helpers for transparently downloading datasets
eulerr
Area-Proportional Euler and Venn Diagrams with Ellipses
falco
A C++ implementation of FastQC for quality control of sequencing data
gtfparse
Parsing tools for GTF (gene transfer format) files
hugo-theme-diary
Moments piled up. A Hugo theme ported from SumiMakito/hexo-theme-Journal.
MethylDackel
A (mostly) universal methylation extractor for BS-seq experiments.
MultiQC_YC
MultiQC module by YC
pyensembl
Python interface to access reference genome features (such as genes, transcripts, and exons) from Ensembl
pyvenn
2 ~ 6 sets venn diagram for python
qtltools
A complete tool set for molecular QTL discovery and analysis
ShortStack
ShortStack: Comprehensive annotation and quantification of small RNA genes
snakemake
This is the development home of the workflow management system Snakemake. For general information, see
snakemake-executor-plugin-slurm
A Snakemake executor plugin for submitting jobs to a SLURM cluster
snakemake-interface-executor-plugins
This package provides a stable interface for interactions between Snakemake and its executor plugins.
snakemake-interface-storage-plugins
This package provides a stable interface for interactions between Snakemake and its storage plugins.
ssw
Python interface for SIMD Smith-Waterman Library
varcode
Library for manipulating genomic variants and predicting their effects