Computational Plant Science Lab's repositories
3D_model_reconstruction_demo
Implementation of the 3D reconstruction pipeline optimized for plant branching structures.
3D_model_traits_demo
Computation of root phenes from 3D point clouds.
raspberry_pi_cluster
raspberry pi cluster MPI and step motor control
3D_review_scripts
scripts for comparison 3D reconstruction pipelines
DIRT-storage
Automatic estimation of storage root length, diameter and volume.
3D_colmap
General-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipeline using COLMAP
3D_model_descriptor
Building a 3D root Descriptor: To encode the maize root structure variation in genotype and interaction with environment using Quaternion representation of maize root Structure
3D_Sorghum_phenotyping_pipeline
Pipeline: Traits computation from 3D Sorghum root models
3d_sorghum_segmentation
A machine learning model U2net and opencv based color clustering method that performs object segmentation in a single shot
AI_U2net_color_clustering
A machine learning model U2net and opencv based color clsutering method hat performs object segmentation in a single shot
ml_smart_docker
Docker container for smart
Root-Diameter-Prediction-with-Residual-Neural-Network
Root Diameter Prediction with Residual Neural Network
ml_smart_release
SMART software release version
plantit-example-bind-mounts
A simple workflow demonstrating bind mounts.