A Reference Phenotyping Platform for Crop Breeding and Improvement

A Reference Phenotyping Platform for Crop Breeding and Improvement's repositories

computing-pipeline

Pipeline to Extract Plant Phenotypes from Reference Data

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reference-data

Coordination of Data Products and Standards for TERRA reference data

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tutorials

Learn to use TERRA REF data and software

Language:Jupyter NotebookBSD-3-Clause8 31 150

documentation

TERRAref documentation

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extractors-hyperspectral

Scripts and code relevant to the SWIR and VNIR cameras.

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extractors-multispectral

Scripts and code relevant to the FLIR, PSII, NDVI, PRI and active reflectance (Crop Circle) sensors.

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terrautils

Python library for TERRA-REF specific modules and methods, e.g. those shared by multiple extractors.

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drone-pipeline

Generalizing the TERRA REF pipelines for processing data from UAV's

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extractors-stereo-rgb

Scripts and code relevant to the 8MP RGB stereo 3D cameras.

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icasa

ICASA vocabulary

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traits

Species traits data

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traitvis-webapp

Shiny application for visualizing trait data

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workflow-pilot

Github repo for ECSS workflow pilot project

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extractors-metadata

Scripts and code for generally applicable metadata extraction, e.g. extracting geospatial footprints from multiple sensors' metadata.

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laser3d

ply file to plot level las file science function package

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search-api

flask api for advanced search interface

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search-frontend

frontend for advanced search interface

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sensor-metadata

Device and sensor fixed metadata

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extractors-3dscanner

Scripts and code relevant to the 3D height scanner.

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extractors-environmental

Scripts and code relevant to the CO2 and environmental logger sensors, as well as Maricopa lightning/weather/irrigation data.

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quality-metrics

Repo for general QA/QC tools and extractors.

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terraref.github.io

[Deprecated] Original website content for the TERRA-REF reference phenotyping platform

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brapi

Breeder's API implementation for TERRA-REF

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data-paper

03 28

data-publication

Just the content going to Dryad; see also terraref/data-paper for data descriptor

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kubeadm-terraform

Terraform plan that uses data-8's kubeadm bootstrap for Kubernetes on Openstack

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service-products

A REST server that provide helps locate file products.

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stereo_rgb

the new science functions in Stereo-RGB extractor

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toolserver-dockerfiles

TERRA-REF Dockerfiles for Clowder toolserver

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workbench-catalog

Catalog of services available via TERRA-REF Analysis Workbench

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