MR-TIM: MR-based head tissue modelling is open source MATLAB software for head tissue modelling from structural magnetic resonance (MR) images.
It performs automated segmentation of whole-head T1-weighted MR images in 12 tissues:
- brain gray matter (GM)
- cerebellar GM
- brain white matter (WM)
- cerebellar WM
- brainstem
- cerebrospinal fluid (CSF)
- spongy bone
- compact bone
- muscle
- fat
- eyes
- skin
MR-TIM requires MATLAB 2016b (MathWorks) or later versions and it is intended as a toolbox for SPM12 software package.
To install and use the software, read the user guide.
