The Cortical Processing Laboratory at UCL

phy

phy: interactive visualization and manual spike sorting of large-scale ephys data

KiloSort

GPU code for spike sorting

allenCCF

Tools to work with Allen Inst CCF data in matlab

Suite2P

Tools for processing 2P recordings

neuropixels

Information about Neuropixels electrode arrays

spikes

cortex lab code for electrophysiology

alyx

Database for experimental neuroscience laboratories

sortingQuality

Functions to assess quality of spike sorting results

Rigbox

A MATLAB toolbox for running behavioral neuroscience experiments and managing data

widefield

Image processing and tools for widefield imaging

phylib

Lightweight electrophysiological data analysis library

npytools

[WIP] Command-line utilities to deal with NPY array files

Transcriptomics

MATLAB software for analysis of single-cell RNA sequencing data, including probabilistic clustering, latent factor modeling, nbtSNE, visualization tools

psychofit

A module for fitting 2AFC psychometric data

PinkRigs

Shared code for processing data on the pink rigs

wheelAnalysis

LabCI

Automation server for MATLAB & Python continuous integration, written in Node.js

alyx-matlab

Some MATLAB functions for easier interfacing with an Alyx database

npy_matlab

Experimental code to read/write NumPy .NPY files in MATLAB

signals

Intuitive behavioral neuroscience experiment design in MATLAB

ALF

alf2neuroscope

Converts ALF format to be read in neuroscope

pykilosort

[WIP] Python port of Kilosort 2

expDefinitions

experiment definition files (primarily Signals)

Lilrig

code specific to Lilrig

datostim

mmmGUI

"mouse movie manager" and GUI

mpep

mPEP runs experiments where stimuli and timings can be decided in advance (i.e. not in the context of behavior)

PoppyRig

Code for poppy rig

WeekendWater

A script to post weekend water to Alyx and email users