Ziemowit Slawinski's repositories
webots_agent
Webots based robotic agents implementation for Reinforcement learning and Spiking Neural Networks
topically-driven-language-model-py35
Tensorflow code to train TDLM
camp_2019_ei_balance_neuron
NCBS CAMP 2019: Neuron based project for EI balance
covid-poland-by-region
Auto updated graph shows new COVID-19 cases in Poland by region based on Wikipedia: https://pl.wikipedia.org/wiki/Pandemia_COVID-19_w_Polsce#Statystyki
neuronpp_gym
Spiking Neural Gym agent created on top of NEURON++ and OpenAI Gym libraries
spiking_neural_agents
Research of Brian2 usage for spiking neural network agents with reinforcement learning purpose
biochemical_reaction_graph
Creates interactive reaction graph in the web browser for NeuroRD tool
neuron_get_started
Simple example of NEURON + NetPyNE installation with instruction and test files. Useful for CentOS configuration on the cluster
online_inception
This is an example of how pretrained convolutional neural network for image recognition can learn like humans from what it sees in real time. It uses pretrained Inception v3 network.
arxiv-style
A Latex style and template for paper preprints (based on NIPS style)
BlenderNEURON
Exports 3D structure and activity from NEURON simulator to Blender
bogacz-2016
Implementation of Actor Uncertainty (AU) Model based on: Mikhael, J. G. & Bogacz, R. Learning Reward Uncertainty in the Basal Ganglia. PLoS Comput. Biol. (2016)
bogacz-2019
Implementation of: Möller, M., & Bogacz, R. (2019). Learning the payoffs and costs of actions. In PLoS Computational Biology (Vol. 15, Issue 2). https://doi.org/10.1371/journal.pcbi.1006285
combeetal2018-modeldb
This is a "fork" from CA1 pyramidal neuron (Combe et al 2018) from: https://senselab.med.yale.edu/modeldb/ShowModel.cshtml?model=244416 The intention of this fork is to create a file containing all Ca currents for all time steps for apical dendrites.
deep-learning-workshop-2019
Code for Deep Learning Workshop for Nencki Openlab in the Nencki Experimental Biology Institute, Polish Academy of Sciences
deep-q-learning
Simple Deep Q Learning example
differentiable_neuron
Example of ionic channel dynamics implemented only in Python from HH model, Graham et al. 2014 mode. The repository also contains Ca2+ radial diffusionl through dendritic spine implemented in NEURON
grahametal2014-modeldb
This is a fork from Graham et al. 2014 model from ModelDB. The purpose of this fork was to preserve in separate file calcium currents for 4 spines in Striatum Radiatum part of the CA1 Pyramidal Neuron (selected spines are indicated by colored bars)
moose_nerp
MOOSE model of the Medium Spiny Neurons and CA1 Piramidal Neurons
morpho_learning
The framework to train morphologically complex neurons with approach from classical machine learning
morpho_neuro_rxd
Morphological model of neuron with RxD ionic diffusion. Based on NEURON.
neuron_gui2
Jupyter Notebook which shows the new capabilities of GUI2 for NEURON. Downloaded from https://neuron.yale.edu/ftp/ramcdougal/ball-and-stick-1.ipynb
slurm_scripts
Easy to run scripts for Slurm jobs
swot
Identify email addresses or domains names that belong to colleges or universities. Help automate the process of approving or rejecting academic discounts.
TecoGAN
This repo will contain source code and materials for the TecoGAN project, i.e. code for a TEmporally COherent GAN