Monti Lab

hypeR

An R Package for Geneset Enrichment Workflows

nf-gwas-pipeline

A Nextflow Genome-Wide Association Study (GWAS) Pipeline

CaDrA

Candidate Drivers Analysis: Multi-Omic Search for Candidate Drivers of Functional Signatures

BS831

Course Materials for Genomics Data Mining

bands

Simple interactive chromosome maps written in R

K2Taxonomer

A tool for the multi-resolution characterization of molecular taxonomies in bulk and single-cell omics data

ppi-context

Contextualization of protein-protein interaction databases by cell line

shine

Structure Learning for Hierarchical Networks

OmicSignature

pipeliner-2

Pipeliner upgraded for Nextflow DSL2 modules

ConAn

Resampling-Based Differential Network Connectivity Analysis

SigRepoR

Xposome

Chemical Screenings using high-throughput transcriptomics assays

bieulergy

Interactive analysis of multi-omics regulatory networks

evalGSVAsig

Evaluate genes driving signature

knnmi

k-nearest neighbor mutual information estimator

ProteomicsSignaturesCentenarians

Analysis scripts associated to Sebastiani et al., Aging Cell 20(2):e13290, 2021

shine-nf

A Collection of Nextflow Modules for Bayesian Structure Learning

yQTLpipeline

Adipogen2020

CaDrA.shiny

A web interface for interacting with the R package CaDrA

carcinogenome

hypeR-db

A hypeR repository for relational and flat genesets

hypeR-docs

Documentation for hypeR

hypeR-modules

Integration of hypeR modules in Shiny applications

hypeR-next

Network enrichment through random walks

hypeR-shiny

A web interface for interacting with the R package hypeR

omics-network

An R6 data representation of biological networks and accessory omics data

pml_analysis

A code repo for the PML project.

rpkgs

A skeleton for R packages + Docker / Pkgdown / Pages aimed for Bioconductor