Ben Pedigo's repositories
networks-course
A short course on network data science at Johns Hopkins University
cookiecutter-pypackage
A tool for creating skeleton python projects
networkframe
Lightweight representations of networks using Pandas DataFrames
apical_classifier
Tools for training and applying an apical classifier on skeleton data from the chunkedgraph
axon_id
Tools used in identifying the axons and dendrites of neurons
bdpedigo
Readme for my profile
bdpedigo.github.io
Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes
brainbark
Tools for cortical connectome analyses
cave-ecosystem
Mapping packages and services in the CAVE ecosystem
cloud-workflow-mwe
Minimal working example for cloud workflow using CAVE, Amazon SQS, Google Cloud Storage, etc.
ImageryClient
Publication-ready visualization of overlays of imagery and segmentation from cloudvolume data
jhu-dissertation-mwe
JHU Dissertation LaTeX mwe
neurovista
Python package for plotting neural morphologies with PyVista
pcg_skel
Robust skeletonization of PyChunkedGraph-backed objects
PCGL2Cache
Level 2 caching system for the PyChunkedGraph
PyChunkedGraph
Chunked graph structure used for human proof-reading in Python
quarto-web
Quarto website
skedits
Examining the effect of proofreading on inferences in connectomics
skedits-app
Tools for orchestrating skeleton analysis in cloud infrastructure
skeleton_plot
tools for plotting swc and meshparty skeletons
skervice
Skeletonization service for the CAVE ecosystem
talks
Catalog of slides for talks