Fabrício Almeida-Silva's repositories
doubletrouble
An R package to identify and classify duplicated genes from whole-genome protein sequence data
HybridExpress
An R package for comparative transcriptomic analyses of hybrids and their progenitors
doubletroubledb
A dashboard to explore and download the duplicated gene repertoire in eukaryote species
almeidasilvaf.github.io
Personal website and blog
cogeqc_paper
Data and code associated with the paper "Assessing the quality of comparative genomics data and results with the cogeqc R/Bioconductor package"
CompEvoBio
Written materials for the course "Introduction to Computational Evolutionary Biology"
doubletrouble_paper
Code and data associated with the paper "doubletrouble: an R/Bioconductor package for the identification, classification, and analysis of gene and genome duplications"
HybridExpress_paper
Data and code associated with the paper "HybridExpress: an R/Bioconductor package for comparative transcriptomic analyses of hybrids and their progenitors"
polyploid_GRNs
Code and data associated with the manuscript "Whole-genome duplications and the long-term evolution of gene regulatory networks in angiosperms"
rnaseq_intro
Code handouts for the course "Introduction to RNA-seq analysis with R/Bioconductor"
SoybeanAtlas_issues
A repo to report issues on the Soybean Expression Atlas database.
bioc-rnaseq
Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor
blogcomments
Repo to store comments in my blog posts
PCMR_solutions
Solutions for the practice problems in the book "Phylogenetic Comparative Methods in R", by Liam Revell and Luke Harmon
pkg_status
A repo to track the build status of my R packages on Bioconductor and GitHub
planttfhunter
An R package to identify plant transcription factors from protein sequence data and classify them in families
presentations
Slide presentations for talks I've given
r-bioc-intro
Materials for the course "Introduction to R/Bioconductor"
SoyPestGCN_paper
Data and code associated the the SoyPestGCN paper