vep-annotation

There are 0 repository under vep-annotation topic.

CERC-Genomic-Medicine / vep_pipeline
Pipeline for variant annotation using Variant Effect Predictor (VEP)
genetics variant-annotation pipeline annotations variant nextflow vep-annotation gwas variant-effect-prediction vep
Language:Jupyter Notebook 4
bch-gnome / hpds_annotation
Annotation pipeline for HPDS
vep-annotation vcf hpds docker-image python2
Language:Python 3
pstawinski / pygenebe
PyGeneBe: A Python client seamlessly integrating with the GeneBe platform, offering efficient annotation of genetic variants through its API, while supporting pandas, VCF file formats, and HGVS parsing
acmg-guidelines bioinformatics genetics gnomad hgvs python variant-annotations vep-annotation clinvar
Language:Python 3
CansuDincer / BEstimate
BEstimate, a Python module that systematically analyses guide RNA (gRNA) targetable sites across given sequences for given Base Editors, and functional and clinical effects of the potential edits on the resulting proteins.
genome-editing base-editors grna vep-annotation protein-interaction
Language:Python 2
GuilhermeBPinheiro / savep_v01.2022
Pipeline para Anotação de Arquivo VCF de Variantes Somáticas utilizando o Ensembl Variant Effect Predictor (VEP) version 105.0 via Google Colab. O SAVEP_v01.2022 é de código aberto e está disponível no GitHub.
pipeline vcf vep-annotation
2
gcerchia / STRike
Ensembl VEP plugin that generates HGVS notation for Short Tandem Repeats (STR)
bioinformatics microsatellites vep-annotation vep-plugin
Language:Perl 0

CERC-Genomic-Medicine / vep_pipeline