beast2
There are 1 repository under beast2 topic.
- Language:R 42
- Language:Vue 17
LinguaPhylo / linguaPhylo
LinguaPhylo: A language for describing, visualising and simulating probabilistic phylogenetic models
Language:Java 15ropensci / beautier
R package to generate the same BEAST2 XML parameter files as generated by BEAUti 2
Language:R 13- Language:R 10
- Language:JavaScript 7
- Language:Java 7
CompEvol / sampled-ancestors
This BEAST2 package provides MCMC proposals and post-processing tools for sampling trees containing sampled ancestors
Language:Java 7andersgs / beast2_constsites
Update your BEAST2 XML to account for constant sites
Language:Python 6- Language:Java 6
- Language:Java 6
richelbilderbeek / pirouette
R package that estimates the error BEAST2 makes from a given phylogeny
Language:R 3- Language:Java 2
- Language:Java 2
- Language:HTML 2
j3551ca / BEAST-FLOW
Nextflow pipeline for estimation of evolutionary rate using Bayesian statistics.
Language:Nextflow 2- TransCOVID
theLongLab / TransCOVID
A dedicated pipeline designed for the inference of COVID19 transmission networks in a population complete with the prediction of unsampled sources of infection using SARS-CoV-2 genomic sequences. Our pipeline is built upon the BEAST2 and TransPhylo software.
Language:R 2 - Language:Python 2
- Language:Java 1
BEAST2-Dev / codonsubstmodels
Codon substitution models for DNA
Language:Java 1laduplessis / beast2_bdskysa_ebov_example
Example for BEAST v2.5 paper
Language:Python 1Data and scripts to reproduce the molecular clock dating analyses presented in "Ancient bacterial genomes reveal a formerly unknown diversity of Treponema pallidum strains in early modern Europe (Majander et al.)
Language:Python 1- Language:Java
- Language:Python
Automatically exported from code.google.com/p/model-selection
Language:JavaHanqing1989 / Github_Bioinformatics_Learning
不定期更新在学习生物信息学过程中所用的编程语言、包和软件的教程和案例，欢迎有兴趣的伙伴一起交流学习。
Language:HTMLhisplan / docker-BEASTvntr
Dockerized BEASTvntr : a package for BEAST2 implementing phylogenetic analysis for VNTR or Microsatellites
Language:Shellsantiagosnchez / STRlength2repeat
Python code to convert STR length data to number of repetitions
Language:Python- Language:HTML
- Language:Java
- Language:JavaScript
walterxie / startingtree
nice algorithm to initialize starting trees in BEAST2
Language:Java- Language:Python
