Julia Epi (JuliaEpi)

Julia Epi

JuliaEpi

Geek Repo

Computational epidemiology in @JuliaLang.

Twitter:@EpiJulia

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Julia Epi's repositories

MathEpiDeepLearning

Awesome-spatial-temporal-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included. Keep updating.

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.github

Special repository containing the profile directory of JuliaEpi.

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EpiSciML-Tutorials

Julia for Epidemiology - With a Scientific Machine Learning Perspective.

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BayesFitR_Halle

Teaching material for Halle Summer School 2022: Bayesian inference of infectious disease ODE models in R

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COVID19-Italy-Integrated-Surveillance-Data

COVID-19 integrated surveillance data provided by the Italian Institute of Health and deconvolved via UnrollingAverages.jl.

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Discussions

Repository hosting organisation-level discussions for JuliaEpi to broadcast news, create conversation in the community, answer questions, and share ideas.

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ICD_GEMs.jl

ICD_GEMs.jl is a Julia package that allows to translate ICD-9 codes in ICD-10 and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).

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monkeypox_UK

Some code for monkeypox

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COVID-19_Piedmont

COVID-19 Surveillance Data Modelling and Management Pipeline in Piedmont.

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CANMOD-2022

Materials for 2022 CANMOD Workshop on Compositional Methods for Health Modeling

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ColPrac

Contributor's Guide on Collaborative Practices for Community Packages

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CoronaNetR

R package that offers access to the CoronaNet policy database of government responses to COVID-19.

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COVID19_Spatial_Model

This repository contains the implementation of the model described in the paper "Predicting the impact of COVID-19 vaccination campaigns - a flexible age-dependent spatially-stratified predictive model, accounting for multiple viral variants and vaccines".

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COVIDPoliticalEvents.jl

Paper replication package.

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COVIDScenarioPipeline

Public shared code for doing scenario forecasting and creating reports for various governmental entities.

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EasyModelAnalysis.jl

High level functions for analyzing the output of simulations

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epi_impacts_NHS_COVID-19_app_first_year

Code to support the paper "Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year"

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EpiNow2

Estimate Realtime Case Counts and Time-varying Epidemiological Parameters

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EpiSimulator

EpiSimulator: A Data-Driven Stochastic Hybrid Model for COVID-19 in Italy.

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estimate-emergence-from-data

Code for reproducing the results from the preprint "Estimating the date of emergence of an epidemic outbreak from detection data: Applications to COVID-19".

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linelist

R package for handing linelist data

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nowcasting_covid19

Bayesian Nowcasting with application to COVID-19 fatalities in Sweden

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tutorials_julia

This is the official repository for the "doggo dot jl" YouTube channel (fka "julia for talented amateurs").

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