Julia Epi's repositories
MathEpiDeepLearning
Awesome-spatial-temporal-data-mining-packages. Julia and Python resources on spatial and temporal data mining. Mathematical epidemiology as an application. Most about package information. Data Sources Links and Epidemic Repos are also included. Keep updating.
EpiSciML-Tutorials
Julia for Epidemiology - With a Scientific Machine Learning Perspective.
BayesFitR_Halle
Teaching material for Halle Summer School 2022: Bayesian inference of infectious disease ODE models in R
COVID19-Italy-Integrated-Surveillance-Data
COVID-19 integrated surveillance data provided by the Italian Institute of Health and deconvolved via UnrollingAverages.jl.
Discussions
Repository hosting organisation-level discussions for JuliaEpi to broadcast news, create conversation in the community, answer questions, and share ideas.
ICD_GEMs.jl
ICD_GEMs.jl is a Julia package that allows to translate ICD-9 codes in ICD-10 and viceversa via the General Equivalence Mappings (GEMs) of the International Classification of Diseases (ICD).
monkeypox_UK
Some code for monkeypox
COVID-19_Piedmont
COVID-19 Surveillance Data Modelling and Management Pipeline in Piedmont.
CANMOD-2022
Materials for 2022 CANMOD Workshop on Compositional Methods for Health Modeling
ColPrac
Contributor's Guide on Collaborative Practices for Community Packages
CoronaNetR
R package that offers access to the CoronaNet policy database of government responses to COVID-19.
COVID19_Spatial_Model
This repository contains the implementation of the model described in the paper "Predicting the impact of COVID-19 vaccination campaigns - a flexible age-dependent spatially-stratified predictive model, accounting for multiple viral variants and vaccines".
COVIDPoliticalEvents.jl
Paper replication package.
COVIDScenarioPipeline
Public shared code for doing scenario forecasting and creating reports for various governmental entities.
EasyModelAnalysis.jl
High level functions for analyzing the output of simulations
epi_impacts_NHS_COVID-19_app_first_year
Code to support the paper "Epidemiological impacts of the NHS COVID-19 app in England and Wales throughout its first year"
EpiNow2
Estimate Realtime Case Counts and Time-varying Epidemiological Parameters
EpiSimulator
EpiSimulator: A Data-Driven Stochastic Hybrid Model for COVID-19 in Italy.
estimate-emergence-from-data
Code for reproducing the results from the preprint "Estimating the date of emergence of an epidemic outbreak from detection data: Applications to COVID-19".
linelist
R package for handing linelist data
nowcasting_covid19
Bayesian Nowcasting with application to COVID-19 fatalities in Sweden
tutorials_julia
This is the official repository for the "doggo dot jl" YouTube channel (fka "julia for talented amateurs").