in-situ-sequencing

There are 0 repository under in-situ-sequencing topic.

gear-genomics / dicey
In-silico PCR, primer design and padlock design for in-situ sequencing
gear-genomics pcr primer primer-design in-silico sanger-sequencing amplicon amplicon-sequencing padlock in-situ-sequencing
Language:C++ 42
wanglab-broad / ClusterMap
ClusterMap for multi-scale clustering analysis of spatial gene expression
in-situ-sequencing spatial-transcriptomics single-cell-analysis spatial-omics bioinformatics cell-segmentation transcriptomics
Language:Jupyter Notebook 39
wahlby-lab / spage2vec
spatial-data-analysis graphsage in-situ-sequencing in-situ-hybridization
Language:Jupyter Notebook 13
LiuLab-Bioelectronics-Harvard / ClusterMap
ClusterMap for multi-scale clustering analysis of spatial gene expression
bioinformatics transcriptomics cell-segmentation single-cell-analysis spatial-transcriptomics spatial-omics in-situ-sequencing
Language:Jupyter Notebook 7
broadinstitute / pooled-cell-painting-profiling-recipe
:woman_cook: Recipe repository for image-based profiling of Pooled Cell Painting experiments
carpenter-lab cell-painting in-situ-sequencing pooled-screen data-science recipe pooled-cell-painting
Language:Python 6
broadinstitute / pooled-cell-painting-profiling-template
:hammer_and_wrench: Use me to version control Pooled Cell Painting data and processing pipelines
carpenter-lab cell-painting in-situ-sequencing pooled-screen template-repository pooled-cell-painting
Language:Python 2
gear-genomics / padlock
Design padlock probes for in-situ sequencing
genomics in-situ-sequencing probes probe-design
Language:HTML