Ahmed M. A. Elsherbini's repositories
download_hmp_data
Download Human microbiome project (WGS) data from hmpdacc.org via https
ISEScan_stats
Condense and summarize many results form ISEScan into CSV for heatmaps
HTS_insilico_PCR
High throughput In-silico PCR
prokaryotic_assembly_annotate
For bacterial genomes assembly and annotate
AhmedElsherbini
Config files for my GitHub profile.
Bakta_stats
Condense and summarize many results form BAKTA into CSV for statistics
Cblaster_stats
Parse binary files from Cblaster into more useful information
PADLOC_stats
Condense and summarize many results form PADLOC into CSV for heatmaps
Code-for-RVD-et-al.-2023
Secretory IgA impacts the microbiota density in the human nose
Code_for_Elsherbini_et_al_2023
Utilizing genomic signatures to gain insights into the dynamics of SARS-CoV-2 through Machine and Deep Learning techniques
Code_for_paper_2023
Code_for_paper_2023
MicrobeAnnotator_stats
Condense and summarize MicrobeAnnotator metabolic pathway tab files from many genomes into a big heatmap CSV files
Nasal_CST_quick_checker
Quickly check community state type from nasal microbiome data