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Practical mutation testing and fault injection for C and C++
Mutation testing resources: how to make better code by introducing bugs
SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
Descartes supports developers to improve their test suites by reporting weak spots in covered code
SigProfilerMatrixGenerator creates mutational matrices for all types of somatic mutations. It allows downsizing the generated mutations only to parts for the genome (e.g., exome or a custom BED file). The tool seamlessly integrates with other SigProfiler tools.
SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational patterns in cancer genomes. The tool seamlessly integrates with other SigProfiler tools.
Maven plugin to handle multi module projects for PiTest
Mutation analysis tool for Coq verification projects
LLVM Mutation Artisan (MART) is a configurable mutation testing framework based on LLVM
R wrapper for utilizing the SigProfilerMatrixGenerator framework
Introduction to Mutation Testing
An R wrapper for SigProfilerExtractor that allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.
SigProfilerTopography allows evaluating the effect of chromatin organization, histone modifications, transcription factor binding, DNA replication, and DNA transcription on the activities of different mutational processes. SigProfilerTopography elucidates the unique topographical characteristics of mutational signatures.
An R wrapper for running the SigProfilerPlotting framework
Interactive Protein Sequence VIsualization/Viewer - Interactive Circos
Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and non-clustered groups on a sample-dependent basis.
Homebrew tap for https://infection.github.io/
Generate a rich feature space describing all possible mutations in a given protein sequence (+ structure)
A Language/Platform agnostic Mutation & Analysis Language.
Python script for detecting mutations in aligned reads (.bam |.sam) e.g. from RNA base conversion techniques such as TimeLapse, SLAM-seq, TUC-seq
The Simulink Model Mutation Testing project provides a framework for generating mutants, and CSV file as an output. It utilizes the MATLAB environment to load the model, apply mutations, and collect outputs.
Another needleplot for mutation data, used by ActiveDriverDB
A project that will predict the mutation score of methods and classes using a support vector machine and source code metrics
Generates a Dextool Mutate vs LCOV side by side presentation
Unofficial VSCode extension of 'Stryker Mutator' for hunting mutants hiding in our codebase (currently, it supports .NET)
Term project for the Computational Biology (ENS210) course in Sabancı University.
Mutation Detection in Lung Cancer Cell Lines using CNNs
WOLAND is a multiplatform tool to analyze point mutation patterns using resequencing data from any organism or cell. It is implemented as a Perl and R tool using as inputs filtered unannotated or annotated SNV lists, combined with its correspondent genome sequences.
Analyzing TCGA cohorts and multiomic data in R