genome-sequence-analysis

There are 0 repository under genome-sequence-analysis topic.

CMU-SAFARI / GenASM
Source code for the software implementations of the GenASM algorithms proposed in our MICRO 2020 paper: Senol Cali et. al., "GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis" at https://people.inf.ethz.ch/omutlu/pub/GenASM-approximate-string-matching-framework-for-genome-analysis_micro20.pdf
bitap-algorithm genome-sequence-analysis read-mapping hw-sw-co-design pre-alignment-filtering approximate-string-matching read-alignment
Language:C 30
TomMakesThings / Genome-Sequence-Analysis-HMM
HMM for annotating coding regions of DNA in S. cerevisiae chromosome III
baum-welch bioinformatics chromosome computational-biology forward-algorithm gc-content genome-sequence-analysis hidden-markov-model hmm s-cerevisiae viterbi-algorithm yeast
Language:Jupyter Notebook 4
n-shenoy / identify-poor-quality-sequencing-cycles-and-bases
Python bioinformatics project to detect poor quality sequencing cycles and deduce the identity of identified bases.
bioinformatics fastq genome-sequence-analysis jupyter-lab python
Language:Jupyter Notebook 0

CMU-SAFARI / GenASM