drug-response-prediction

There are 0 repository under drug-response-prediction topic.

hosseinshn / Velodrome
Velodrome combines semi-supervised learning and out-of-distribution generalization (domain generalization) for drug response prediction and pharmacogenomics
out-of-distribution-generalization domain-generalization pharmacogenomics drug-response-prediction transferlearning bioinformatics
Language:Python 13
CSB5 / CaDRReS-Sc
CaDRReS-Sc is a framework for analyzing drug response heterogeneity based on single-cell RNA-seq data
drug-response-prediction gene-expression-profile scrna-seq tumor cadrres-sc
Language:Jupyter Notebook 11
xingbpshen / MTDRP
The Drug Response Prediction 2022 project in Computational Biology and Artificial Intelligence (COMBINE) Laboratory, McGill University.
deep-learning domain-adaptation drug-response-prediction gdsc pytorch ctrp
Language:Python 10
gambalab / DREEP
Drug Response Estimation from single-cell Expression Profiles
drug-repurposing drug-resistance drug-response-prediction single-cell-rna-seq gf-icf
Language:C++ 8
skoc / deep-learning-drug-response
Deep Learning based Drug Response Predication with public Omics datasets
deep-learning drug-response-prediction
Language:Python 4
burakcan-izmirli / DeepResponse
DeepResponse: Large Scale Prediction of Cancer Cell Line Drug Response with Deep Learning Based Pharmacogenomic Modelling
cancer-research convolutional-neural-networks deep-learning drug-response-prediction graph-neural-networks graph-transformer machine-learning multi-omics
Language:Python 3
NKI-CCB / TRANSACT
Python implementation of TRANSACT, a tool to transfer non-linear predictors of drug response from model systems to tumors.
cell-lines drug-response drug-response-prediction interpretability kernel-methods python tumors principal-vectors
Language:HTML 2
PaccMann / paccmann_predictor_tf
Tensorflow implementation of PaccMann (drug sensitivity prediction)
drug-sensitivity tensorflow cancer deep-learning drug-response-prediction
Language:Python 2
CrossTx
CABSEL / CrossTx
CrossTx: Cross-cell line Transcriptomic Signature Predictions
drug-discovery drug-repurposing drug-response-prediction gene-expression personalized-medicine
Language:Jupyter Notebook 1
NKI-CCB / Percolate
Implementation of Percolate, an exponential family JIVE statistical model for multi-view integration
drug-response-prediction exponential-family glm-pca jive machine-learning multi-omics multi-view pytorch
Language:Python 1
amatov / ResistanceBiomarkerAnalysis
biomarker-discovery circulating-tumor-cells drug-response-prediction breast-cancer gastric-cancer prostate-cancer circular-hough-transform voronoi-diagram intensity-histogram-thresholding stationary-wavelet-transform sobel-filter feature-eccentricity difference-of-gaussian tubulin-bundling tubulin-inhibitors tubulin-tyrosination microfluidics-chip-enrichment brca1-drug-resistance paclitaxel-therapy transcription-factor-localization
Language:MATLAB
HUBioDataLab / DeepResponse
DeepResponse: Large Scale Prediction of Cancer Cell Line Drug Response with Deep Learning Based Pharmacogenomic Modelling
cancer-research convolutional-neural-networks deep-learning drug-response-prediction graph-neural-networks graph-transformer machine-learning multi-omics
Language:Python