ojcharles

MutationFeatures

Generate a rich feature space describing all possible mutations in a given protein sequence (+ structure)

viral_alphafold

Various Alphafold2 structures of viral proteins

HIV1-evolutionary-dynamics

HIV-1 evolutionary dynamics under non-suppressive antiretroviral therapy

hivdrg

HIV drug resistance genotyping and synonymous / non synonymous AA mutant calling for various HIV references used in the PANGEA project

activeML_game

advent-of-code-2023

conda_envs

does_my_ode_model_fit_junk

DrugResDocClassifier

Binary classifier to identify scientific publications reporting drug resistance mutations in pathogens

HCMV-data

herpesdrg

Drug Resistance Genotyping of antiviral treated Herpesviruses

lib-padel

herpesdrg-db

Database of herpesvirus antiviral resistance mutations

notebooks

notes_on_qsar

self learning and reference material on QSAR moleculear modelling

ojc-thesis

pipelines

protools

RCircos

:exclamation: This is a read-only mirror of the CRAN R package repository. RCircos — Circos 2D Track Plot. Homepage: http://bitbucket.org/henryhzhang/rcircos

rusty-phylo

small_py_projects

translacean-to-rustacean

viral_antigen_map

Relating IEDB herpes antigenic sites to nucleotide position of reference strain using tblastn

WeightedLD

sequence weighting applied to calculations of Linkage Disequilibrium

WVF_String_Analysis

von willebrand factor - image analysis scripts.